RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 MGAT4AQ9UM21 535 aa14.96□□□□□ -0.01
HMGA1-202ENST00000347617 NUBP2Q9Y5Y2 271 aa14.96□□□□□ -0.01
HMGA1-202ENST00000347617 CCDC88CQ9P219 2028 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 LOC102723532A0A0G2JNH3 316 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 OTOL1A6NHN0 477 aaPredicted RBP14.96□□□□□ -0.02
HMGA1-202ENST00000347617 E7EQ34 232 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 AKAP8O43823 692 aaKnown RBP14.96□□□□□ -0.02
HMGA1-202ENST00000347617 LZTS3O60299 673 aaPredicted RBP14.96□□□□□ -0.02
HMGA1-202ENST00000347617 POU3F3P20264 500 aaPredicted RBP14.96□□□□□ -0.02
HMGA1-202ENST00000347617 EPHA4P54764 986 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 LIM2P55344 173 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 EFNB1P98172 346 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 B4GALNT1Q00973 533 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 SLC5A12Q1EHB4 618 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 FAM214AQ32MH5 1076 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 PAQR6Q6TCH4 344 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 ASPGQ86U10 573 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 LRRC28Q86X40 367 aaPredicted RBP14.96□□□□□ -0.02
HMGA1-202ENST00000347617 YAF2Q8IY57 180 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 ASZ1Q8WWH4 475 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 OR8D1Q8WZ84 308 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 ATG10Q9H0Y0 220 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 PPA2Q9H2U2 334 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 ZNF275Q9NSD4 429 aaPredicted RBP14.96□□□□□ -0.02
HMGA1-202ENST00000347617 EXO1Q9UQ84 846 aaKnown RBP14.96□□□□□ -0.02
HMGA1-202ENST00000347617 MAP4K5Q9Y4K4 846 aa14.96□□□□□ -0.02
HMGA1-202ENST00000347617 A0A1W2PRB8 838 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 NPC1O15118 1278 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 TLX2O43763 284 aaPredicted RBP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 PSIP1O75475 530 aaKnown RBP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 SERPINI2O75830 405 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 ATP1B2P14415 290 aaPredicted RBP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 XPAP23025 273 aaPredicted RBP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 RBMS1P29558 406 aaKnown RBP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 GAS1P54826 345 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 CDK5Q00535 292 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 FABP5Q01469 135 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 GPR176Q14439 515 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 ELAVL3Q14576 367 aaKnown RBP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 PUM1Q14671 1186 aaKnown RBP eCLIP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 P2RY14Q15391 338 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 AANATQ16613 207 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 ZNF284Q2VY69 593 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 LEXMQ3ZCV2 418 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 C9orf64Q5T6V5 341 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 FAM71E1Q6IPT2 247 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 MRGPREQ86SM8 312 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 COMMD7Q86VX2 200 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 TRAM1L1Q8N609 369 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 OR4K1Q8NGD4 311 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 NR4A3Q92570 626 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 FGF11Q92914 225 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 TMEM203Q969S6 136 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 RFT1Q96AA3 541 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 PHF21AQ96BD5 680 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 ZNF354BQ96LW1 612 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 GFM1Q96RP9 751 aaKnown RBP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 ZNF607Q96SK3 696 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 PKP4Q99569 1192 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 C7orf50Q9BRJ6 194 aaKnown RBP14.95□□□□□ -0.02
HMGA1-202ENST00000347617 ZSCAN5AQ9BUG6 496 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 HDHD2Q9H0R4 259 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 DPAGT1Q9H3H5 408 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 C12orf4Q9NQ89 552 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 RHCGQ9UBD6 479 aa14.95□□□□□ -0.02
HMGA1-202ENST00000347617 A0A1W2PRQ8 180 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 MEN1O00255 615 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 RFXAPO00287 272 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 PLOD3O60568 738 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 TSC22D2O75157 780 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 NME6O75414 186 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-202ENST00000347617 TPPPO94811 219 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 SOX14O95416 240 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 CATP04040 527 aaKnown RBP14.94□□□□□ -0.02
HMGA1-202ENST00000347617 TP53P04637 393 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-202ENST00000347617 LAMP2P13473 410 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 GJA4P35212 333 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 OPRD1P41143 372 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 GIPRP48546 466 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 TAP2Q03519 686 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 C2orf80Q0P641 193 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 GINS1Q14691 196 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 FCN2Q15485 313 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 ATP13A5Q4VNC0 1218 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 ENTPD8Q5MY95 495 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 AGTRAPQ6RW13 159 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 TECPR1Q7Z6L1 1165 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 ARIH2OSQ8N7S6 290 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 OR56A3Q8NH54 315 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 NXPE3Q969Y0 559 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 RNFT2Q96EX2 444 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 WDR34Q96EX3 536 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 OTUB1Q96FW1 271 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-202ENST00000347617 LRR1Q96L50 414 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 EFCAB11Q9BUY7 163 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 GHITMQ9H3K2 345 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 ZFP64Q9NPA5 681 aa14.94□□□□□ -0.02
HMGA1-202ENST00000347617 THAP10Q9P2Z0 257 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-202ENST00000347617 LAMA2P24043 3122 aaKnown RBP14.94□□□□□ -0.02
HMGA1-202ENST00000347617 TRANK1O15050 2925 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms