RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SPHARQ15513 63 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 SYT14P1Q58G82 188 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 C16orf62Q7Z3J2 963 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 ASPGQ86U10 573 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 OR10G6Q8NH81 332 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 HTRA1Q92743 480 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 BMFQ96LC9 184 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 C10orf90Q96M02 699 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 NXF2Q9GZY0 626 aaKnown RBP18.15■□□□□ 0.5
COL9A3-201ENST00000343916 C3orf14Q9HBI5 128 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 MKLN1Q9UL63 735 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 GPR52Q9Y2T5 361 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 SCG5P05408 212 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 PTNP21246 168 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 TSFMP43897 325 aaKnown RBP18.15■□□□□ 0.5
COL9A3-201ENST00000343916 SIM1P81133 766 aaPredicted RBP18.15■□□□□ 0.5
COL9A3-201ENST00000343916 CEBPEQ15744 281 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 KCNJ8Q15842 424 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF362Q5T0B9 420 aaPredicted RBP18.15■□□□□ 0.5
COL9A3-201ENST00000343916 TMEM184AQ6ZMB5 413 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 MOAP1Q96BY2 351 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 SEMA4GQ9NTN9 838 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 CCDC59Q9P031 241 aaKnown RBP18.15■□□□□ 0.5
COL9A3-201ENST00000343916 UPK1BO75841 260 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 ALPPP05187 535 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 RHAGQ02094 409 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 ALDH6A1Q02252 535 aaKnown RBP18.14■□□□□ 0.5
COL9A3-201ENST00000343916 COX10Q12887 443 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 NFATC4Q14934 902 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 C1QTNF12Q5T7M4 302 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 KIAA1324Q6UXG2 1013 aaKnown RBP18.14■□□□□ 0.5
COL9A3-201ENST00000343916 PRICKLE2Q7Z3G6 844 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 TMEFF1Q8IYR6 380 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 FAM83FQ8NEG4 500 aaPredicted RBP18.14■□□□□ 0.5
COL9A3-201ENST00000343916 GAL3ST3Q96A11 431 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 SLC35A4Q96G79 324 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 KCNS3Q9BQ31 491 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 CNPPD1Q9BV87 410 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 CLEC1BQ9P126 229 aa18.14■□□□□ 0.5
COL9A3-201ENST00000343916 TRIOO75962 3097 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 ZNF860A6NHJ4 632 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 TTC36A6NLP5 189 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 POLR2CP19387 275 aaPredicted RBP18.14■□□□□ 0.49
COL9A3-201ENST00000343916 GTF2E2P29084 291 aaKnown RBP18.14■□□□□ 0.49
COL9A3-201ENST00000343916 S100A5P33763 92 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 RPS15AP62244 130 aaKnown RBP18.14■□□□□ 0.49
COL9A3-201ENST00000343916 RGS1Q08116 209 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 SELENBP1Q13228 472 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 NCF4Q15080 339 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 SNAPC1Q16533 368 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 PRRT3Q5FWE3 981 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 CLEC12AQ5QGZ9 265 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 MEDAGQ5VYS4 303 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 CD300LDQ6UXZ3 194 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 LYSMD2Q8IV50 215 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 PARP16Q8N5Y8 322 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 SCAIQ8N9R8 606 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 FLVCR1-AS1Q8TAF5 88 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 SLC9A6Q92581 669 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 MRPL38Q96DV4 380 aaKnown RBP18.14■□□□□ 0.49
COL9A3-201ENST00000343916 TRMT61AQ96FX7 289 aaKnown RBP18.14■□□□□ 0.49
COL9A3-201ENST00000343916 MRGPRX1Q96LB2 322 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 POLDIP3Q9BY77 421 aaKnown RBP18.14■□□□□ 0.49
COL9A3-201ENST00000343916 POLR2J2Q9GZM3 115 aaKnown RBP18.14■□□□□ 0.49
COL9A3-201ENST00000343916 MIR1-1HGQ9H1L0 117 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 ANKMY1Q9P2S6 941 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 SLC13A4Q9UKG4 626 aa18.14■□□□□ 0.49
COL9A3-201ENST00000343916 CAB39Q9Y376 341 aaPredicted RBP18.14■□□□□ 0.49
COL9A3-201ENST00000343916 BRWD1Q9NSI6 2320 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 GSAPA4D1B5 854 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 CYP7B1O75881 506 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 SLC35G6P0C7Q6 338 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 CPN2P22792 545 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 ARFIP1P53367 373 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 CDK5Q00535 292 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 ID2Q02363 134 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 OCLNQ16625 522 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 TIMM50Q3ZCQ8 353 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 CCDC92Q53HC0 331 aaPredicted RBP18.13■□□□□ 0.49
COL9A3-201ENST00000343916 FAM26EQ8N5C1 309 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 ADAMTS15Q8TE58 950 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 PATE1Q8WXA2 126 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 CDS1Q92903 461 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 FAM46AQ96IP4 442 aaKnown RBP18.13■□□□□ 0.49
COL9A3-201ENST00000343916 WDR92Q96MX6 357 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 ZNF582Q96NG8 517 aaPredicted RBP18.13■□□□□ 0.49
COL9A3-201ENST00000343916 ACTRT3Q9BYD9 372 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 LYARQ9NX58 379 aaKnown RBP18.13■□□□□ 0.49
COL9A3-201ENST00000343916 POU2F3Q9UKI9 436 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 CARD8Q9Y2G2 431 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 ACADMP11310 421 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 KIAA1024LP59773 190 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 STEAP3Q658P3 488 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 SFTPA2Q8IWL1 248 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 NANOGP1Q8N7R0 232 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 OR8D4Q8NGM9 314 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 TRNT1Q96Q11 434 aaKnown RBP18.13■□□□□ 0.49
COL9A3-201ENST00000343916 OR2A14Q96R47 310 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 OR2A5Q96R48 311 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 YIPF2Q9BWQ6 316 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms