RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 SRRDQ9UH36 339 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 A0A087WV62 115 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 POM121BA6NF01 834 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 AQP9O43315 295 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 EPORP19235 508 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 BMI1P35226 326 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CASRP41180 1078 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NDST2P52849 883 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ARL13AQ5H913 290 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 FRMPD2BQ6IN97 320 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TRMT11Q7Z4G4 463 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DCP1BQ8IZD4 617 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NECAP1Q8NC96 275 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 POLR2J2Q9GZM3 115 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 POLR2J3Q9H1A7 115 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SPANXCQ9NY87 97 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF727A8MUV8 499 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MSI1O43347 362 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 LILRB5O75023 590 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RGS9O75916 674 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PAN3Q58A45 887 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 C10orf120Q5SQS8 335 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TSTD2Q5T7W7 516 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF705AQ6ZN79 300 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 COX15Q7KZN9 410 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC29A3Q9BZD2 475 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SRA1Q9HD15 236 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TDP1Q9NUW8 608 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM181Q9P2C4 612 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SSR3Q9UNL2 185 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NPFFR2Q9Y5X5 522 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PKDREJQ9NTG1 2253 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 C20orf202A1L168 122 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 UBDO15205 165 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 B4GALT5O43286 388 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 FZD6O60353 706 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NANOGP8Q6NSW7 305 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM179Q6ZVK1 233 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 OR10A6Q8NH74 314 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GOT1L1Q8NHS2 421 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CASTOR1Q8WTX7 329 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RGP1Q92546 391 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC6A17Q9H1V8 727 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 LTBP1Q14766 1721 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CCNB2O95067 398 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PCSK6P29122 969 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RGS4P49798 205 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 EFEMP1Q12805 493 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNHIT3Q15649 155 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ABLIM2Q6H8Q1 611 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DESI1Q6ICB0 168 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF517Q6ZMY9 492 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TSPAN33Q86UF1 283 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ADIPOR2Q86V24 386 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DAW1Q8N136 415 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SVBPQ8N300 66 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 C17orf62Q9BQA9 187 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 UTS2RQ9UKP6 389 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC22A3O75751 556 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC1A3P43003 542 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CD276Q5ZPR3 534 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MBOAT1Q6ZNC8 495 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CGRRF1Q99675 332 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SPATA31A5Q5VU36 1347 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SPATA31A3Q5VYP0 1347 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SPATA31A7Q8IWB4 1347 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PTPRQQ9UMZ3 2332 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 UGDHO60701 494 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MYL9P24844 172 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CLCN3P51790 818 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CASP6P55212 293 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PRSS55Q6UWB4 352 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 LRRTM3Q86VH5 581 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 IL31RAQ8NI17 732 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 OIT3Q8WWZ8 545 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 PYCR2Q96C36 320 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF649Q9BS31 505 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MRPL4Q9BYD3 311 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 DPH1Q9BZG8 443 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 LDAHQ9H6V9 325 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 FZD4Q9ULV1 537 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 R4GN57 208 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MYBPHLA2RUH7 354 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CXorf65A6NEN9 183 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SCAF4O95104 1147 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 GABARAPO95166 117 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 MTPNP58546 118 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SLC7A9P82251 487 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CSTF1Q05048 431 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 NPRL2Q8WTW4 380 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CLN6Q9NWW5 311 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 SOX14O95416 240 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 RBM34P42696 430 aaKnown RBP3.36□□□□□ -1.87
SYNE1-201ENST00000341594 HSPA7P48741 367 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 CLCN5P51795 746 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 E2F1Q01094 437 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 DHODHQ02127 395 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 DAG1Q14118 895 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 ANKRD39Q53RE8 183 aa3.36□□□□□ -1.87
SYNE1-201ENST00000341594 TIFAQ96CG3 184 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms