RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 CPNE7Q9UBL6 633 aa22.45■■□□□ 1.18
TRIM54-201ENST00000296098 KLK4Q9Y5K2 254 aa22.45■■□□□ 1.18
TRIM54-201ENST00000296098 ENTPD2Q9Y5L3 495 aa22.45■■□□□ 1.18
TRIM54-201ENST00000296098 SLC22A7Q9Y694 548 aa22.45■■□□□ 1.18
TRIM54-201ENST00000296098 DBTP11182 482 aaKnown RBP22.44■■□□□ 1.18
TRIM54-201ENST00000296098 CSTF2P33240 577 aaKnown RBP eCLIP22.44■■□□□ 1.18
TRIM54-201ENST00000296098 RANBP1P43487 201 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 PCYT1AP49585 367 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 TRAM2Q15035 370 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 TSTQ16762 297 aaKnown RBP22.44■■□□□ 1.18
TRIM54-201ENST00000296098 ABI3BPQ7Z7G0 1075 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 OR4N5Q8IXE1 308 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 OR52P1PQ8NH57 321 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 GPBAR1Q8TDU6 330 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 DIO2Q92813 273 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 SLC6A18Q96N87 628 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 DSN1Q9H410 356 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 POLMQ9NP87 494 aaPredicted RBP22.44■■□□□ 1.18
TRIM54-201ENST00000296098 PTGFRNQ9P2B2 879 aa22.44■■□□□ 1.18
TRIM54-201ENST00000296098 A0A087WUU8 490 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 FAM221BA6H8Z2 402 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 CPSF4LA6NMK7 179 aaKnown RBP22.43■■□□□ 1.18
TRIM54-201ENST00000296098 PRKYO43930 277 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 CYP7B1O75881 506 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 CPMP14384 443 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 ALOX12P18054 663 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 IFNGR2P38484 337 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 GINS1Q14691 196 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 ZNF404Q494X3 552 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 FRRS1Q6ZNA5 592 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 USP53Q70EK8 1073 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 FAM3CQ92520 227 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 SLC9A6Q92581 669 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 RSC1A1Q92681 617 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 PPP1R14BQ96C90 147 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 TMEM80Q96HE8 168 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 CHCHD6Q9BRQ6 235 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 PRR14Q9BWN1 585 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 TSSK6Q9BXA6 273 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 GSDMCQ9BYG8 508 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 LYRM4Q9HD34 91 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 EVA1BQ9NVM1 165 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 USP36Q9P275 1121 aaKnown RBP22.43■■□□□ 1.18
TRIM54-201ENST00000296098 CHST2Q9Y4C5 530 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 ZNF860A6NHJ4 632 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 METTL15A6NJ78 407 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 PRAMEF26H0Y7S4 382 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 H0YGG7 62 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 DNAJB6O75190 326 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 CCNYL3P0C7X3 344 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 PVRP15151 417 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 AVPR1BP47901 424 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 ARF3P61204 181 aaPredicted RBP22.43■■□□□ 1.18
TRIM54-201ENST00000296098 RHAGQ02094 409 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 RELAQ04206 551 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 TIMM50Q3ZCQ8 353 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 FAM26EQ8N5C1 309 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 BAHD1Q8TBE0 780 aaPredicted RBP22.43■■□□□ 1.18
TRIM54-201ENST00000296098 GNPDA2Q8TDQ7 276 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 MMP27Q9H306 513 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 TCEAL2Q9H3H9 227 aaPredicted RBP22.43■■□□□ 1.18
TRIM54-201ENST00000296098 ANKRD19PQ9H560 264 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 SEMA4GQ9NTN9 838 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 TMEM74BQ9NUR3 256 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 CCDC59Q9P031 241 aaKnown RBP22.43■■□□□ 1.18
TRIM54-201ENST00000296098 SZT2Q5T011 3432 aa22.43■■□□□ 1.18
TRIM54-201ENST00000296098 FAM170BA6NMN3 283 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 CCRL2O00421 344 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 FCMRO60667 390 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 EIF2S1P05198 315 aaKnown RBP22.42■■□□□ 1.18
TRIM54-201ENST00000296098 IGHV4-34P06331 123 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 IFNA8P32881 189 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 GIPRP48546 466 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 SMSP52788 366 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 LIMK1P53667 647 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 RGS8P57771 180 aaPredicted RBP22.42■■□□□ 1.18
TRIM54-201ENST00000296098 UBE2IP63279 158 aaKnown RBP22.42■■□□□ 1.18
TRIM54-201ENST00000296098 CDK5Q00535 292 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 ST3GAL3Q11203 375 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 CCINQ13939 588 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 NCF4Q15080 339 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 AMER2Q8N7J2 671 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 CENPOQ9BU64 300 aa22.42■■□□□ 1.18
TRIM54-201ENST00000296098 CACYBPQ9HB71 228 aaKnown RBP22.42■■□□□ 1.18
TRIM54-201ENST00000296098 ZNF443Q9Y2A4 671 aaPredicted RBP22.42■■□□□ 1.18
TRIM54-201ENST00000296098 MRPS2Q9Y399 296 aaKnown RBP22.42■■□□□ 1.18
TRIM54-201ENST00000296098 ARHGEF17Q96PE2 2063 aaPredicted RBP22.42■■□□□ 1.18
TRIM54-201ENST00000296098 C2CD4DB7Z1M9 353 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 C10orf142B7Z368 130 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 ZSCAN9O15535 394 aaPredicted RBP22.41■■□□□ 1.18
TRIM54-201ENST00000296098 LSSP48449 732 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 SLC25A30Q5SVS4 291 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 C19orf48Q6RUI8 117 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 RNF44Q7L0R7 432 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 BCDIN3DQ7Z5W3 292 aaKnown RBP22.41■■□□□ 1.18
TRIM54-201ENST00000296098 KIF18BQ86Y91 864 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 SLC44A3Q8N4M1 653 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 ZNF655Q8N720 491 aaPredicted RBP22.41■■□□□ 1.18
TRIM54-201ENST00000296098 FLCNQ8NFG4 579 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 TEX47Q8TBZ9 253 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms