RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 ADPRHP54922 357 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 COX10Q12887 443 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 SEC23BQ15437 767 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 BTBD16Q32M84 506 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 CDONQ4KMG0 1287 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 KLHL22Q53GT1 634 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 PYDC2Q56P42 97 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 PIP5KL1Q5T9C9 394 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 AGBL4Q5VU57 503 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 PRICKLE2Q7Z3G6 844 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 LSMEM1Q8N8F7 131 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 LSM14AQ8ND56 463 aaKnown RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 C19orf18Q8NEA5 215 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 NFKBIDQ8NI38 313 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 UBL7Q96S82 380 aaPredicted RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 DCLRE1CQ96SD1 692 aaKnown RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ZNF717Q9BY31 904 aaPredicted RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 FOLH1BQ9HBA9 442 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 CLEC2DQ9UHP7 191 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ADAM30Q9UKF2 790 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ACAD8Q9UKU7 415 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 TMPRSS11EQ9UL52 423 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 SLC22A14Q9Y267 594 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 PCM1Q15154 2024 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 TRDV1A0A1B0GX56 115 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 TRBC2A0A5B9 178 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 PATE3B3GLJ2 98 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 BET1O15155 118 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ANXA4P09525 319 aaPredicted RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ETFAP13804 333 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 MAOBP27338 520 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 HNF1BP35680 557 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 GSTM5P46439 218 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 SNRPD1P62314 119 aaKnown RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ABATP80404 500 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 EFNB1P98172 346 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 B4GALNT1Q00973 533 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 SEMG2Q02383 582 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 HEPACAMQ14CZ8 416 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 HSD17B12Q53GQ0 312 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 HACD4Q5VWC8 232 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 TRIQKQ629K1 86 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 BICRALQ6AI39 1079 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 OR52J3Q8NH60 311 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 OR14C36Q8NHC7 312 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 UBASH3BQ8TF42 649 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 GTPBP3Q969Y2 492 aaKnown RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 WDR34Q96EX3 536 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 SLC35A5Q9BS91 424 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 KATNB1Q9BVA0 655 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 MYNNQ9NPC7 610 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 GULP1Q9UBP9 304 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 EXO1Q9UQ84 846 aaKnown RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 GSTK1Q9Y2Q3 226 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.73□□□□□ -0.85
UPF3B-201ENST00000276201 GPSM3Q9Y4H4 160 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 PLXNA2O75051 1894 aa9.73□□□□□ -0.85
UPF3B-201ENST00000276201 MGAT4DA6NG13 374 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 M0R129 80 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 FOXE1O00358 373 aaPredicted RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 SLC30A4O14863 429 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 PLD2O14939 933 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 PDPK1O15530 556 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 LYRM1O43325 122 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 RFPL3O75679 317 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 AP2A2O94973 939 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 POP4O95707 220 aaKnown RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 IGSF6O95976 241 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 IGHV4-34P06331 123 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 CYP2A6P11509 494 aaPredicted RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 AQP1P29972 269 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 GABRA5P31644 462 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 CRATP43155 626 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 EVX1P49640 407 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 GAS1P54826 345 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 WNT4P56705 351 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 TAS2R38P59533 333 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 HOXC5Q00444 222 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 BCL2L1Q07817 233 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 ACSM1Q08AH1 577 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 BAMBIQ13145 260 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 COX20Q5RI15 118 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 ZBTB37Q5TC79 503 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 KIAA0895LQ68EN5 471 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 CASP12Q6UXS9 341 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 LAPTM4BQ86VI4 370 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 C9orf62Q8N4C0 152 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 OR52I1Q8NGK6 324 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 DNASE2BQ8WZ79 361 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 AKAP1Q92667 903 aaKnown RBP eCLIP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 CLIP3Q96DZ5 547 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 PDXPQ96GD0 296 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 HDAC8Q9BY41 377 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 TRIM45Q9H8W5 580 aaPredicted RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 EMC7Q9NPA0 242 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 A4GALTQ9NPC4 353 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 EXOSC1Q9Y3B2 195 aaKnown RBP9.72□□□□□ -0.85
UPF3B-201ENST00000276201 SLCO1B1Q9Y6L6 691 aa9.72□□□□□ -0.85
UPF3B-201ENST00000276201 CDH10Q9Y6N8 788 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms