RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RMND5BQ96G75 393 aaPredicted RBP15.37■□□□□ 0.05
USP4-201ENST00000265560 SLC41A2Q96JW4 573 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 NMNAT1Q9HAN9 279 aaPredicted RBP15.37■□□□□ 0.05
USP4-201ENST00000265560 SLC6A14Q9UN76 642 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 MN1Q10571 1320 aaPredicted RBP15.37■□□□□ 0.05
USP4-201ENST00000265560 CTNSO60931 367 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 AVPR2P30518 371 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 HPCAP84074 193 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 MEP1AQ16819 746 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 WDR74Q6RFH5 385 aaPredicted RBP15.37■□□□□ 0.05
USP4-201ENST00000265560 TAGAPQ8N103 731 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 PHF10Q8WUB8 498 aaKnown RBP15.37■□□□□ 0.05
USP4-201ENST00000265560 ZNF501Q96CX3 271 aaPredicted RBP15.37■□□□□ 0.05
USP4-201ENST00000265560 ZNF354BQ96LW1 612 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 PIP5K1AQ99755 562 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 KRT84Q9NSB2 600 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 PTGFRNQ9P2B2 879 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 CTSFQ9UBX1 484 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 SERTAD3Q9UJW9 196 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 MRPS33Q9Y291 106 aaKnown RBP15.37■□□□□ 0.05
USP4-201ENST00000265560 WDR45Q9Y484 360 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 PCDHGA8Q9Y5G5 932 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 IGHV5-10-1A0A0J9YXX1 117 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 SEC23BQ15437 767 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 FRRS1Q6ZNA5 592 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 OR6C4Q8NGE1 309 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 DGAT2Q96PD7 388 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 SDF2Q99470 211 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 M0R129 80 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 BCAS1O75363 584 aaPredicted RBP15.36■□□□□ 0.05
USP4-201ENST00000265560 PDE9AO76083 593 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 SMIM18P0DKX4 95 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 S1PR1P21453 382 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 CLDN6P56747 220 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 OR10G2Q8NGC3 310 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 MIPOL1Q8TD10 442 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 LMF1Q96S06 567 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 IFT80Q9P2H3 777 aaPredicted RBP15.36■□□□□ 0.05
USP4-201ENST00000265560 LOC100130705A0A1B0GUX0 176 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 VGLL3A8MV65 326 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 PLOD3O60568 738 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 MYF6P23409 242 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 RAPSNQ13702 412 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 GIPC3Q8TF64 312 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 CCDC74BQ96LY2 380 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 ALPK1Q96QP1 1244 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 ING2Q9H160 280 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 ADNPQ9H2P0 1102 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 LRRN3Q9H3W5 708 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 AKIRIN1Q9H9L7 192 aaPredicted RBP15.36■□□□□ 0.05
USP4-201ENST00000265560 KCNE5Q9UJ90 142 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 ORC6Q9Y5N6 252 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 OTOGLQ3ZCN5 2332 aa15.36■□□□□ 0.05
USP4-201ENST00000265560 FITM1A5D6W6 292 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 ADAMDEC1O15204 470 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 ALPPP05187 535 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 ALOX5P09917 674 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 GKN3PP0CG01 181 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 AGXTP21549 392 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 MPLP40238 635 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 KCNC4Q03721 635 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 PIGFQ07326 219 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 ARHGAP40Q5TG30 622 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 GARNL3Q5VVW2 1013 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 KDM4DQ6B0I6 523 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 TYW3Q6IPR3 259 aaKnown RBP15.35■□□□□ 0.05
USP4-201ENST00000265560 ST13P4Q8IZP2 240 aaPredicted RBP15.35■□□□□ 0.05
USP4-201ENST00000265560 OR52P1PQ8NH57 321 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 CTHRC1Q96CG8 243 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 GRIP2Q9C0E4 1043 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 OR8D2Q9GZM6 311 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 RASSF1Q9NS23 344 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 RXFP3Q9NSD7 469 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 OCIAD1Q9NX40 245 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 FTSJ1Q9UET6 329 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 C3orf18Q9UK00 162 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 IGHV3-20A0A0C4DH32 117 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 CPSF4LA6NMK7 179 aaKnown RBP15.35■□□□□ 0.05
USP4-201ENST00000265560 TNFAIP8O95379 198 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 IGFBP1P08833 259 aaPredicted RBP15.35■□□□□ 0.05
USP4-201ENST00000265560 ANXA11P50995 505 aaKnown RBP15.35■□□□□ 0.05
USP4-201ENST00000265560 SKP1P63208 163 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 DCST2Q5T1A1 773 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 C11orf74Q86VG3 221 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 SLC30A8Q8IWU4 369 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 ZNF555Q8NEP9 628 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 BBS10Q8TAM1 723 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 CNIH3Q8TBE1 160 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 CNDP2Q96KP4 475 aaKnown RBP15.35■□□□□ 0.05
USP4-201ENST00000265560 THSD1Q9NS62 852 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 SPTBN2O15020 2390 aa15.35■□□□□ 0.05
USP4-201ENST00000265560 A0A0G2JPF8 293 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 DUXAA6NLW8 204 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 HNRNPCL2B2RXH8 293 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 HNRNPCL3B7ZW38 293 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 HNRNPCL4P0DMR1 293 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 EMDP50402 254 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 NR1D2Q14995 579 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 PWWP2BQ6NUJ5 590 aa15.34■□□□□ 0.05
USP4-201ENST00000265560 ZNF595Q8IYB9 648 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms