RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CACYBPQ9HB71 228 aaKnown RBP11.91□□□□□ -0.5
LIG1-201ENST00000263274 IGLON5A6NGN9 336 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 HMX3A6NHT5 357 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 ADH5P11766 374 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 CTBP2P56545 445 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 CLDN2P57739 230 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 IL20RBQ6UXL0 311 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 GDPGP1Q6ZNW5 385 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 VWA5B2Q8N398 1253 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 SETD7Q8WTS6 366 aaKnown RBP11.91□□□□□ -0.5
LIG1-201ENST00000263274 SLC7A6Q92536 515 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 AP3S1Q92572 193 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 RHBGQ9H310 441 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 SLC35C2Q9NQQ7 365 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 A0A0C4DFX4 3053 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 CACNA1CQ13936 2221 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 A0A087WUU8 490 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 OR52A4PA6NMU1 304 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 B4DXG7 233 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 SLC2A10O95528 541 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 PAK4O96013 591 aaPredicted RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 PIPP12273 146 aaPredicted RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 ADRB3P13945 408 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 HOXB3P14651 431 aaPredicted RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 PAICSP22234 425 aaKnown RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 HTR2BP41595 481 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 MAP2K3P46734 347 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 CHRNEQ04844 493 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 CAMK1Q14012 370 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 SLC9A5Q14940 896 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 TATDN3Q17R31 274 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 XKRXQ6PP77 449 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 SLC36A4Q6YBV0 504 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 RD3Q7Z3Z2 195 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 TBC1D19Q8N5T2 526 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 C12orf76Q8N812 135 aaPredicted RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 OR2L2Q8NH16 312 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 SUSD6Q92537 303 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 FAIM2Q9BWQ8 316 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 TEX12Q9BXU0 123 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 A4GALTQ9NPC4 353 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 SIRT3Q9NTG7 399 aaPredicted RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 DEC1Q9P2X7 70 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 LSM2Q9Y333 95 aaKnown RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 C12orf71A8MTZ7 269 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 EFEMP2O95967 443 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 CHRM4P08173 479 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 MSL3P1P0C860 447 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 PRKAR1AP10644 381 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 TGM3Q08188 693 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 LRRC32Q14392 662 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 CDK10Q15131 360 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 C18orf63Q68DL7 685 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 C12orf73Q69YU5 71 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 OR4C11Q6IEV9 310 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 LCTLQ6UWM7 567 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 OR4N5Q8IXE1 308 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 YIPF7Q8N8F6 280 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 ZNF557Q8N988 423 aaPredicted RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 SETD6Q8TBK2 473 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 HCAR2Q8TDS4 363 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 ZFPM2Q8WW38 1151 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 MAP6Q96JE9 813 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 SPATA5L1Q9BVQ7 753 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 OR51V1Q9H2C8 321 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 SAGE1Q9NXZ1 904 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 ZNF624Q9P2J8 865 aaPredicted RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 ZMAT5Q9UDW3 170 aaKnown RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 PLEKHB1Q9UF11 243 aaPredicted RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 KCND3Q9UK17 655 aa11.9□□□□□ -0.5
LIG1-201ENST00000263274 ZFR2Q9UPR6 939 aaKnown RBP11.9□□□□□ -0.5
LIG1-201ENST00000263274 A0A1W2PPK0 400 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 ZC3H12DA2A288 527 aaKnown RBP11.9□□□□□ -0.51
LIG1-201ENST00000263274 POLR1CO15160 346 aaPredicted RBP11.9□□□□□ -0.51
LIG1-201ENST00000263274 SCO2O43819 266 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 SOD1P00441 154 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 IL1AP01583 271 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 CXCL10P02778 98 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 EPCAMP16422 314 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 SRP54P61011 504 aaKnown RBP11.9□□□□□ -0.51
LIG1-201ENST00000263274 TEKQ02763 1124 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 MZT2BQ6NZ67 158 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 SLC39A5Q6ZMH5 540 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 DGLUCYQ7Z3D6 616 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 LRRTM4Q86VH4 590 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 CHAC2Q8WUX2 184 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 ZNF514Q96K75 400 aaPredicted RBP11.9□□□□□ -0.51
LIG1-201ENST00000263274 POLDIP3Q9BY77 421 aaKnown RBP11.9□□□□□ -0.51
LIG1-201ENST00000263274 ZBP1Q9H171 429 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 TMEM245Q9H330 911 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 MED20Q9H944 212 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 KLHL28Q9NXS3 571 aa11.9□□□□□ -0.51
LIG1-201ENST00000263274 DIMT1Q9UNQ2 313 aaKnown RBP11.9□□□□□ -0.51
LIG1-201ENST00000263274 DNAH14Q0VDD8 3507 aa11.89□□□□□ -0.51
LIG1-201ENST00000263274 A8MVJ9 347 aa11.89□□□□□ -0.51
LIG1-201ENST00000263274 KIAA0355O15063 1070 aa11.89□□□□□ -0.51
LIG1-201ENST00000263274 HRO43593 1189 aa11.89□□□□□ -0.51
LIG1-201ENST00000263274 MC3RP41968 323 aa11.89□□□□□ -0.51
LIG1-201ENST00000263274 GALK2Q01415 458 aa11.89□□□□□ -0.51
LIG1-201ENST00000263274 ID2Q02363 134 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms