RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 FBXO15Q8NCQ5 510 aaPredicted RBP11.66□□□□□ -0.54
NUP88-201ENST00000225696 OR4Q3Q8NH05 313 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 NUP210Q8TEM1 1887 aaPredicted RBP11.66□□□□□ -0.54
NUP88-201ENST00000225696 TCEAL4Q96EI5 215 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 ART5Q96L15 291 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 CAPNS2Q96L46 248 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 GLIPR2Q9H4G4 154 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 SLC28A3Q9HAS3 691 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 TEKT2Q9UIF3 430 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 HCFC2Q9Y5Z7 792 aa11.66□□□□□ -0.54
NUP88-201ENST00000225696 A0A0A6YYJ9 748 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 LOC105371267A0A1B0GV96 52 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 GSAPA4D1B5 854 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 H7BY64 318 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 QSOX1O00391 747 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 TGM5O43548 720 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 POP7O75817 140 aaKnown RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 UBXN7O94888 489 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 SYPP08247 313 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 GNSP15586 552 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 ENPP1P22413 925 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 XPAP23025 273 aaPredicted RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 FRKP42685 505 aaPredicted RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 DUSP2Q05923 314 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 GPR176Q14439 515 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 MINDY4Q4G0A6 757 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 FAM27D1Q5T7N8 215 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 SLC27A4Q6P1M0 643 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 DPPA4Q7L190 304 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 C11orf96Q7Z7L8 435 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 SPRYD4Q8WW59 207 aaPredicted RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 C16orf58Q96GQ5 468 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 PRAP1Q96NZ9 151 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 GTPBP2Q9BX10 602 aaKnown RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 MS4A8Q9BY19 250 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 AICDAQ9GZX7 198 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 MKRN2Q9H000 416 aaKnown RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 ING3Q9NXR8 418 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 ASF1AQ9Y294 204 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 HEATR5BQ9P2D3 2071 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 LRRK1Q38SD2 2015 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 ZC3H12DA2A288 527 aaKnown RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 FAM183AA6NL82 134 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 CPSF4LA6NMK7 179 aaKnown RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 ARHGEF9O43307 516 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 PQBP1O60828 265 aaKnown RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 SLC43A1O75387 559 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 SCO1O75880 301 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 ACP5P13686 325 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 TBXA2RP21731 343 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 TRHRP34981 398 aaPredicted RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 TRIM23P36406 574 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 CDH11P55287 796 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 SMIM11AP58511 58 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 MESP2Q0VG99 397 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 FCN2Q15485 313 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 ZNF805Q5CZA5 627 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 PIP5KL1Q5T9C9 394 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 RAET1GQ6H3X3 334 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 KLBQ86Z14 1044 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 SLC39A11Q8N1S5 342 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 PCNPQ8WW12 178 aaKnown RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 NEUROD4Q9HD90 331 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 TM7SF3Q9NS93 570 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 SEMA4GQ9NTN9 838 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 ZCCHC3Q9NUD5 404 aaKnown RBP11.65□□□□□ -0.54
NUP88-201ENST00000225696 P2RX2Q9UBL9 471 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 IL36AQ9UHA7 158 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 CHST2Q9Y4C5 530 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 CSNK1G3Q9Y6M4 447 aa11.65□□□□□ -0.54
NUP88-201ENST00000225696 COL4A6Q14031 1691 aa11.65□□□□□ -0.55
NUP88-201ENST00000225696 NUMA1Q14980 2115 aa11.65□□□□□ -0.55
NUP88-201ENST00000225696 FAM170BA6NMN3 283 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 KDM4EB2RXH2 506 aaPredicted RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 LCMT2O60294 686 aaKnown RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 IFNA8P32881 189 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 SRP9P49458 86 aaKnown RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 MAB21L1Q13394 359 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 LASP1Q14847 261 aaKnown RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 SF3A2Q15428 464 aaKnown RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 DUSP6Q16828 381 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 LY6G5CQ5SRR4 150 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 IDNKQ5T6J7 187 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 BCL2L15Q5TBC7 163 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 CREB3L2Q70SY1 520 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 MRGPREQ86SM8 312 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 FAM20CQ8IXL6 584 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 OR11H4Q8NGC9 324 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 ANGPTL6Q8NI99 470 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 TEX47Q8TBZ9 253 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 HSD17B8Q92506 261 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 SLC35G5Q96KT7 338 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 AMDHD1Q96NU7 426 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 HDHD2Q9H0R4 259 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 NARFLQ9H6Q4 476 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 NFKBIL1Q9UBC1 381 aaPredicted RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 EXTL2Q9UBQ6 330 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 TRAV6A0A075B6T7 132 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 SGK494L7N484 410 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 KPNA3O00505 521 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms