RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 RAB13P51153 203 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SF3A2Q15428 464 aaKnown RBP5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SSX2Q16385 188 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 LPAL2Q16609 132 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 KRBOX4Q5JUW0 171 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 TMEM107Q6UX40 140 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CEACAM19Q7Z692 300 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 LRRC57Q8N9N7 239 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 KDM1BQ8NB78 822 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 OR6C4Q8NGE1 309 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CDCA3Q99618 268 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-209ENST00000635750 MICU1Q9BPX6 476 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 FUCA2Q9BTY2 467 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 OSBPL7Q9BZF2 842 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 DERL2Q9GZP9 239 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SAP130Q9H0E3 1048 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SPHK2Q9NRA0 654 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SARDHQ9UL12 918 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 PCDHGA5Q9Y5G8 931 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 WIF1Q9Y5W5 379 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 DCCP43146 1447 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CHEK1O14757 476 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SLC16A5O15375 505 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 LCMT2O60294 686 aaKnown RBP5.3□□□□□ -1.56
SCN1A-209ENST00000635750 GSRP00390 522 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CRHBPP24387 322 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 TAS2R31P59538 309 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CRYZQ08257 329 aaKnown RBP5.3□□□□□ -1.56
SCN1A-209ENST00000635750 MSMO1Q15800 293 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CCDC58Q4VC31 144 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 C6orf132Q5T0Z8 1188 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 PLCXD3Q63HM9 321 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 GRAMD2AQ8IUY3 354 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 DNAJC22Q8N4W6 341 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 ZNF461Q8TAF7 563 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 TEPSINQ96N21 525 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CGREF1Q99674 301 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 HES7Q9BYE0 225 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SMOC2Q9H3U7 446 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 RETREG1Q9H6L5 497 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 MBD5Q9P267 1494 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SLC35F4A4IF30 521 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 NKX6-3A6NJ46 265 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 GABRR3A8MPY1 467 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 FAAHO00519 579 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CPOXP36551 454 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 PRPS1P60891 318 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 RAB11AP62491 216 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 PTCHD3Q3KNS1 767 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 BRICD5Q6PL45 260 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CFAP77Q6ZQR2 320 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 TXNDC5Q8NBS9 432 aaKnown RBP5.3□□□□□ -1.56
SCN1A-209ENST00000635750 RPLP0P6Q8NHW5 317 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 WDR20Q8TBZ3 569 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SFXN5Q8TD22 340 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 ACOT11Q8WXI4 607 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-209ENST00000635750 CORO2AQ92828 525 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 BPIFA2Q96DR5 249 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 HSD17B14Q9BPX1 270 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 SMG9Q9H0W8 520 aaKnown RBP5.3□□□□□ -1.56
SCN1A-209ENST00000635750 NSUN3Q9H649 340 aaKnown RBP5.3□□□□□ -1.56
SCN1A-209ENST00000635750 IL23AQ9NPF7 189 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 MYOTQ9UBF9 498 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 PLEKHM1Q9Y4G2 1056 aa5.3□□□□□ -1.56
SCN1A-209ENST00000635750 ERCC6L2Q5T890 1561 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 BAZ2AQ9UIF9 1905 aaKnown RBP5.29□□□□□ -1.56
SCN1A-209ENST00000635750 A0A1W2PQU0 124 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 CEBPZOSA8MTT3 80 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 B4DXG7 233 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 K7EQM0 130 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 TACR3P29371 465 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 NUDT1P36639 197 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 PITPNBP48739 271 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 EFNA3P52797 238 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 MLLT10P55197 1068 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 NKX6-1P78426 367 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-209ENST00000635750 CHRNEQ04844 493 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 PTP4A2Q12974 167 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 UGT8Q16880 541 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 PDLIM3Q53GG5 364 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-209ENST00000635750 OR52E8Q6IFG1 317 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 OR4F6Q8NGB9 312 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 NKD2Q969F2 451 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-209ENST00000635750 DNAJC19Q96DA6 116 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 TIMD4Q96H15 378 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 HSH2DQ96JZ2 352 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 EPHX3Q9H6B9 360 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 ERVK13-1Q9NX77 482 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 ZNF223Q9UK11 482 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-209ENST00000635750 OR1A2Q9Y585 309 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 IGLON5A6NGN9 336 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 F5H5K5 113 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 LEFTY1O75610 366 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 MAS1P04201 325 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 H2AFB2P0C5Z0 115 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 DRD2P14416 443 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 DNAJB1P25685 340 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 VEGFCP49767 419 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 TAS2R39P59534 338 aa5.29□□□□□ -1.56
SCN1A-209ENST00000635750 HES1Q14469 280 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms