RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 SNAP25P60880 206 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ST8SIA6P61647 398 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 DYNLL1P63167 89 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RBP5P82980 135 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 YWHAHQ04917 246 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SLC34A1Q06495 639 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 LCP2Q13094 533 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SRSF9Q13242 221 aaKnown RBP eCLIP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RUNX3Q13761 415 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CYLC2Q14093 348 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 LY6DQ14210 128 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RCN2Q14257 317 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 FASTKQ14296 549 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 EMC2Q15006 297 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 KRT31Q15323 416 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SIX1Q15475 284 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CDO1Q16878 200 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 TWISTNBQ3B726 338 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RNF212Q495C1 297 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 IFI44LQ53G44 452 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ODF2Q5BJF6 829 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 NHLRC3Q5JS37 347 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 MPP7Q5T2T1 576 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 DCAF12Q5T6F0 453 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 DDI2Q5TDH0 399 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ARMC3Q5W041 872 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SEL1L3Q68CR1 1132 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SNRNP48Q6IEG0 339 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 KRTAP5-7Q6L8G8 165 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ARMCX5Q6P1M9 558 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 PODNL1Q6PEZ8 512 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 DCLRE1AQ6PJP8 1040 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 VITQ6UXI7 678 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SIGLEC15Q6ZMC9 328 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 MSANTD1Q6ZTZ1 278 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ANKRD33Q7Z3H0 272 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 GPR141Q7Z602 305 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RPAINQ86UA6 219 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 APOBEC3FQ8IUX4 373 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CCDC83Q8IWF9 413 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 AQP12AQ8IXF9 295 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 DND1Q8IYX4 353 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 TDHQ8IZJ6 230 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SYCP3Q8IZU3 236 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CLYBLQ8N0X4 340 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 DEFB123Q8N688 67 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 Q8N7P7 452 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 KLHL30-AS1Q8NEE0 82 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 C17orf47Q8NEP4 570 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 TRPV1Q8NER1 839 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 GOT1L1Q8NHS2 421 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 OCC1Q8TAD7 63 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 TYMSOSQ8TAI1 123 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SPATA18Q8TC71 538 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RAET1EQ8TD07 263 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 AFAP1L1Q8TED9 768 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 AGAP11Q8TF27 550 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SSC4DQ8WTU2 575 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 U2AF1L4Q8WU68 220 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SNRNP27Q8WVK2 155 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ZDHHC19Q8WVZ1 309 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CKAP2Q8WWK9 683 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 TCP11Q8WWU5 503 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 LIPHQ8WWY8 451 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ESAMQ96AP7 390 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RAB3CQ96E17 227 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ERO1AQ96HE7 468 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ZBED3Q96IU2 234 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CXorf58Q96LI9 332 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 JAKMIP1Q96N16 626 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RCHY1Q96PM5 261 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 PRMT1Q99873 361 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ATG101Q9BSB4 218 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 LRRC2Q9BYS8 371 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 OCR1Q9BZK8 76 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 NAPBQ9H115 298 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ABCG4Q9H172 646 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 PARLQ9H300 379 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 PRO3102Q9H379 93 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 RNF41Q9H4P4 317 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 C5orf66Q9H5L9 145 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 ZNF665Q9H7R5 613 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 NT5DC2Q9H857 520 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SRD5A3Q9H8P0 318 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 COPS7BQ9H9Q2 264 aaPredicted RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 LMAN1LQ9HAT1 526 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 NMUR1Q9HB89 426 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CD209Q9NNX6 404 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 DEPPQ9NTK1 212 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 THYN1Q9P016 225 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 FBXL5Q9UKA1 691 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 PILRAQ9UKJ1 303 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 EXOC7Q9UPT5 735 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 SLC9A8Q9Y2E8 581 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 KLK4Q9Y5K2 254 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CHD9Q3L8U1 2897 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CHD3Q12873 2000 aaKnown RBP0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 TRPM6Q9BX84 2022 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 CEP250Q9BV73 2442 aa0.87□□□□□ -2.27
SMARCB1-209ENST00000635578 MROH7-TTC4A0A0A0MT08 1334 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms