RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 COQ8BQ96D53 544 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 C7orf26Q96N11 449 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 SECISBP2Q96T21 854 aaKnown RBP19.06■□□□□ 0.64
CLN3-240ENST00000631023 C3orf14Q9HBI5 128 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 SH2D2AQ9NP31 389 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 CHCHD2Q9Y6H1 151 aaPredicted RBP19.06■□□□□ 0.64
CLN3-240ENST00000631023 RELNP78509 3460 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 A0A1W2PRB8 838 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 NPIPA5E9PKD4 350 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 TFECO14948 347 aaPredicted RBP19.06■□□□□ 0.64
CLN3-240ENST00000631023 PPM1BO75688 479 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 CT45A8P0DMV1 189 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 CT45A9P0DMV2 189 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 FBXW4P57775 412 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 PLGLB1Q02325 96 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 SRSF11Q05519 484 aaKnown RBP19.06■□□□□ 0.64
CLN3-240ENST00000631023 PLCXD2Q0VAA5 305 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 ZNHIT3Q15649 155 aaPredicted RBP19.06■□□□□ 0.64
CLN3-240ENST00000631023 LSM12Q3MHD2 195 aaKnown RBP19.06■□□□□ 0.64
CLN3-240ENST00000631023 CT45A2Q5DJT8 189 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 TBCELQ5QJ74 424 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 RGS9BPQ6ZS82 235 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 SPATA19Q7Z5L4 167 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 SLC34A3Q8N130 599 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 DIO2Q92813 273 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 DPY30Q9C005 99 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 ZNF446Q9NWS9 450 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 NPIPA1Q9UND3 350 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 TTC36A6NLP5 189 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 G3V3Y1 287 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 ACOT7O00154 380 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 UNC5CO95185 931 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 ABCB1P08183 1280 aaPredicted RBP19.05■□□□□ 0.64
CLN3-240ENST00000631023 EPHA3P29320 983 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 KRT20P35900 424 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 RBPJQ06330 500 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 ZNF155Q12901 538 aaPredicted RBP19.05■□□□□ 0.64
CLN3-240ENST00000631023 BNC2Q6ZN30 1099 aaPredicted RBP19.05■□□□□ 0.64
CLN3-240ENST00000631023 NUP54Q7Z3B4 507 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 OMA1Q96E52 524 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 GPR137Q96N19 417 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 BHLHE41Q9C0J9 482 aaPredicted RBP19.05■□□□□ 0.64
CLN3-240ENST00000631023 WDR55Q9H6Y2 383 aaPredicted RBP19.05■□□□□ 0.64
CLN3-240ENST00000631023 OR10H1Q9Y4A9 318 aa19.05■□□□□ 0.64
CLN3-240ENST00000631023 ANKRD33BA6NCL7 494 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 ASNA1O43681 348 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 RFC3P40938 356 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 CORO7P57737 925 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 PPIAP62937 165 aaKnown RBP19.04■□□□□ 0.64
CLN3-240ENST00000631023 KCNJ2P63252 427 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 PGS1Q32NB8 556 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 RNFT1Q5M7Z0 435 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 NXNQ6DKJ4 435 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 CAMKMTQ7Z624 323 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 SLC22A16Q86VW1 577 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 SIAH3Q8IW03 269 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 SLC44A2Q8IWA5 706 aaPredicted RBP19.04■□□□□ 0.64
CLN3-240ENST00000631023 SPPL2AQ8TCT8 520 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 OR5P2Q8WZ92 322 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 DUSP26Q9BV47 211 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 TSPAN10Q9H1Z9 355 aaPredicted RBP19.04■□□□□ 0.64
CLN3-240ENST00000631023 IL1RL2Q9HB29 575 aa19.04■□□□□ 0.64
CLN3-240ENST00000631023 CNOT11Q9UKZ1 510 aaKnown RBP19.04■□□□□ 0.64
CLN3-240ENST00000631023 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.04■□□□□ 0.64
CLN3-240ENST00000631023 A0A0G2JMM0 328 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 GOLGA8QA0A0J9YX86 632 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 A0A1W2PPB8 328 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 A0A1W2PRS3 328 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 GOLGA8OA6NCC3 632 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 KIR3DP1A8MWS1 328 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 GOLGA8NF8WBI6 632 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 EMC8O43402 210 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 ABCB7O75027 752 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 NME6O75414 186 aaPredicted RBP19.03■□□□□ 0.64
CLN3-240ENST00000631023 REM1O75628 298 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 PSMG1O95456 288 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 EFNA1P20827 205 aaPredicted RBP19.03■□□□□ 0.64
CLN3-240ENST00000631023 PIGAP37287 484 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 DNASE1L1P49184 302 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 PRR5P85299 388 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 HSP90B2PQ58FF3 399 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 PRAMEF20Q5VT98 475 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 TMBIM1Q969X1 311 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 DOHHQ9BU89 302 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 NTMQ9P121 344 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 BOKQ9UMX3 212 aaPredicted RBP19.03■□□□□ 0.64
CLN3-240ENST00000631023 USH1CQ9Y6N9 552 aa19.03■□□□□ 0.64
CLN3-240ENST00000631023 OR6C70A6NIJ9 312 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 SNX4O95219 450 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 CDK9P50750 372 aaKnown RBP19.02■□□□□ 0.64
CLN3-240ENST00000631023 CLNS1AP54105 237 aaKnown RBP19.02■□□□□ 0.64
CLN3-240ENST00000631023 PRKAG1P54619 331 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 KCNK10P57789 538 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 MRPS22P82650 360 aaKnown RBP19.02■□□□□ 0.64
CLN3-240ENST00000631023 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.02■□□□□ 0.64
CLN3-240ENST00000631023 VPS26BQ4G0F5 336 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 CYP27C1Q4G0S4 372 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 SZRD1Q7Z422 152 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 GHDCQ8N2G8 530 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 NUP43Q8NFH3 380 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms