RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 EMDP50402 254 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ART1P52961 327 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 PRKAA2P54646 552 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 PKNOX1P55347 436 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 PSPHP78330 225 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 HMGCS1Q01581 520 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 DUSP2Q05923 314 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 LCP2Q13094 533 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 SNTB1Q13884 538 aaKnown RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 FLYWCH1Q4VC44 716 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 TRMT12Q53H54 448 aaKnown RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 ZNF628Q5EBL2 1059 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 FAM219BQ5XKK7 198 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 FBXW10Q5XX13 1052 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 DESI1Q6ICB0 168 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ENPP6Q6UWR7 440 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 YRDCQ86U90 279 aaKnown RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 CCDC116Q8IYX3 515 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 CEP112Q8N8E3 955 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 SIMC1Q8NDZ2 872 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 OR9A2Q8NGT5 310 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 OR14L1PQ8NHC6 308 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ZNF675Q8TD23 568 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ACMSDQ8TDX5 336 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 TMBIM1Q969X1 311 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 EXOSC8Q96B26 276 aaKnown RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 ERP27Q96DN0 273 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 RMND5BQ96G75 393 aaPredicted RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 WDYHV1Q96HA8 205 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ZNF681Q96N22 645 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 COL21A1Q96P44 957 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 POLDIP3Q9BY77 421 aaKnown RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 SHCBP1LQ9BZQ2 653 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 CLEC4MQ9H2X3 399 aaPredicted RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 SERHLQ9NQF3 203 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 CRIM1Q9NZV1 1036 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 PSMC3IPQ9P2W1 217 aaPredicted RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 HEY2Q9UBP5 337 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 EDARQ9UNE0 448 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 EXO1Q9UQ84 846 aaKnown RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 OTOGQ6ZRI0 2925 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 C2orf72A6NCS6 295 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 MBD3L4A6NDZ8 208 aaPredicted RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 MBD3L3A6NE82 208 aaPredicted RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 OR6C70A6NIJ9 312 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 MBD3L5A6NJ08 208 aaPredicted RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 KDM4EB2RXH2 506 aaPredicted RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 H0Y3Z8 333 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 TO15178 435 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 ERN1O75460 977 aaKnown RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 CRCPO75575 148 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 CTAG2O75638 210 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 CBR3O75828 277 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 GSTA1P08263 222 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 PYGBP11216 843 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 CYP4B1P13584 511 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 DNAJA1P31689 397 aaKnown RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 MPIP34949 423 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 OPRM1P35372 400 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 PTGDSP41222 190 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 HTR6P50406 440 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 ZNF136P52737 540 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 DGKQP52824 942 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 NAGLUP54802 743 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 RAE1P78406 368 aaKnown RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 BTKQ06187 659 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 ZNF763Q0D2J5 394 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 EFR3AQ14156 821 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 IMPG1Q17R60 797 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 FBXL19-AS1Q494R0 122 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 SPDYAQ5MJ70 313 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 DCST1Q5T197 706 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 AAGABQ6PD74 315 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 SCIMPQ6UWF3 145 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 IFNEQ86WN2 208 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 KIF18BQ86Y91 864 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 FAM9CQ8IZT9 166 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 GOT1L1Q8NHS2 421 aaPredicted RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 MBD3L2Q8NHZ7 208 aaPredicted RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 CDC26Q8NHZ8 85 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 KIF18AQ8NI77 898 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 RDH11Q8TC12 318 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 C16orf78Q8WTQ4 265 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 FAM222BQ8WU58 562 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 KAT2AQ92830 837 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 NINJ1Q92982 152 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 CCDC126Q96EE4 140 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 L3HYPDHQ96EM0 354 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 APIPQ96GX9 242 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 BTBD9Q96Q07 612 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 BBS4Q96RK4 519 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 SH3GL2Q99962 352 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 GPATCH1Q9BRR8 931 aaKnown RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 EBPLQ9BY08 206 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 STMN4Q9H169 189 aaPredicted RBP8.93□□□□□ -0.98
VRK3-216ENST00000599342 ANKRA2Q9H9E1 313 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 CALHM2Q9HA72 323 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 MID1IP1Q9NPA3 183 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 MIEF1Q9NQG6 463 aa8.93□□□□□ -0.98
VRK3-216ENST00000599342 SLC35C2Q9NQQ7 365 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms