RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-218	ENST00000598907	MRPL19	P49406	292 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	RAP1GDS1	P52306	607 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	RPL38	P63173	70 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ACTN3	Q08043	901 aa	Predicted RBP	12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	GKAP1	Q5VSY0	366 aa	Predicted RBP	12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	RTL6	Q6ICC9	239 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	MRM1	Q6IN84	353 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	NIPAL1	Q6NVV3	410 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	PRSS41	Q7RTY9	318 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	PAGE2	Q7Z2X7	111 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	YTHDF3	Q7Z739	585 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	NUDT13	Q86X67	352 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	LGI4	Q8N135	537 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ACOT4	Q8N9L9	421 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	FNDC5	Q8NAU1	212 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	OR9A4	Q8NGU2	314 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	C16orf52	Q8NHV5	167 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ZCCHC10	Q8TBK6	192 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	LPAR4	Q99677	370 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	YIPF4	Q9BSR8	244 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ROGDI	Q9GZN7	287 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	CLK4	Q9HAZ1	481 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	AIG1	Q9NVV5	245 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	DLGAP4	Q9Y2H0	992 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ARL2BP	Q9Y2Y0	163 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	LIPG	Q9Y5X9	500 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	GPR45	Q9Y5Y3	372 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ZNF407	Q9C0G0	2248 aa		12.82	□□□□□ -0.36
SHKBP1-218	ENST00000598907		A0A0G2JN53	185 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	CLCA1	A8K7I4	914 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907		E9PBE3	544 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907		H0YIG0	161 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	UBD	O15205	165 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	CDC123	O75794	336 aa	Predicted RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	NSA2	O95478	260 aa	Known RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	KLK1	P06870	262 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	PRPS2	P11908	318 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	BCKDHA	P12694	445 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	SDC1	P18827	310 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	XCR1	P46094	333 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	AVPR1B	P47901	424 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	HLCS	P50747	726 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	DIO3	P55073	304 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	MTTP	P55157	894 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	TRA2B	P62995	288 aa	Known RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	BTN3A2	P78410	334 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	IRX1	P78414	480 aa	Predicted RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	PLGLB1	Q02325	96 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	DAZAP2	Q15038	168 aa	Predicted RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	DEFB134	Q4QY38	66 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	IL23R	Q5VWK5	629 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	NXN	Q6DKJ4	435 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	PAOX	Q6QHF9	649 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	CLNK	Q7Z7G1	428 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	RELL2	Q8NC24	303 aa	Predicted RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	RILP	Q96NA2	401 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	SERINC2	Q96SA4	455 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	C1orf50	Q9BV19	199 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	NPL	Q9BXD5	320 aa	Predicted RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	BRINP2	Q9C0B6	783 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ANKH	Q9HCJ1	492 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ALKBH4	Q9NXW9	302 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	NOP53	Q9NZM5	478 aa	Known RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	KCMF1	Q9P0J7	381 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	HEY2	Q9UBP5	337 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	NAALAD2	Q9Y3Q0	740 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	POLR3H	Q9Y535	204 aa	Predicted RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ASB4	Q9Y574	426 aa		12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	SON	P18583	2426 aa	Known RBP	12.81	□□□□□ -0.36
SHKBP1-218	ENST00000598907	CUBN	O60494	3623 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907		A0A088AWK7	358 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	TUBAL3	A6NHL2	446 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	NDUFAB1	O14561	156 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ANKRD28	O15084	1053 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	TMPRSS11D	O60235	418 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	PCDH7	O60245	1069 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	DNAJB6	O75190	326 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	MYO1D	O94832	1006 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	F12	P00748	615 aa	Predicted RBP	12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ANXA4	P09525	319 aa	Predicted RBP	12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	IL1RN	P18510	177 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ZNF10	P21506	573 aa	Predicted RBP	12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	BMP5	P22003	454 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	MAPK1	P28482	360 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	SSR2	P43308	183 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	GSTM5	P46439	218 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ASCL1	P50553	236 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ATP4B	P51164	291 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	SLC26A5	P58743	744 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	SLAMF1	Q13291	335 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	RUNX2	Q13950	521 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	GSTA3	Q16772	222 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	CCNYL2	Q5T2Q4	361 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	C1orf185	Q5T7R7	199 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	CYP4Z2P	Q8N1L4	340 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	ZFP62	Q8NB50	900 aa	Predicted RBP	12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	LINC01560	Q8TB33	94 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	RNASE6	Q93091	150 aa	Known RBP	12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	TSLP	Q969D9	159 aa		12.8	□□□□□ -0.36
SHKBP1-218	ENST00000598907	PERP	Q96FX8	193 aa		12.8	□□□□□ -0.36

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