RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SLC6A2P23975 617 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 GALNSP34059 522 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 STAT5AP42229 794 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 PGDP52209 483 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 PER3P56645 1201 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 PSME3P61289 254 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 MAP4K2Q12851 820 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 GAB1Q13480 694 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 SERTAD2Q14140 314 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 ELOAQ14241 798 aaKnown RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 SELPLGQ14242 412 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 NSDHLQ15738 373 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 TRMT12Q53H54 448 aaKnown RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 FAAH2Q6GMR7 532 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 NANOGP8Q6NSW7 305 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 TMEM107Q6UX40 140 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 DNAJC14Q6Y2X3 702 aaPredicted RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 LANCL3Q6ZV70 420 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 ASRGL1Q7L266 308 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 ANKRD37Q7Z713 158 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 CDH24Q86UP0 819 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 SLC15A3Q8IY34 581 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 ESX1Q8N693 406 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 OR7G2Q8NG99 324 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 OR2Y1Q8NGV0 311 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 DNAJB8Q8NHS0 232 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 ZFP90Q8TF47 636 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 PTPMT1Q8WUK0 201 aaPredicted RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 CTHRC1Q96CG8 243 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 FAM120BQ96EK7 910 aaKnown RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 AURKBQ96GD4 344 aaPredicted RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 RBM18Q96H35 190 aaKnown RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 ANKRD27Q96NW4 1050 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 HOPXQ9BPY8 73 aaPredicted RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 IKZF5Q9H5V7 419 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 NANOGQ9H9S0 305 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 CXorf21Q9HAI6 301 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 GPATCH2Q9NW75 528 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 CMTM6Q9NX76 183 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 MAT2BQ9NZL9 334 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 NTMQ9P121 344 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 PCDHGB4Q9UN71 923 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 POLHQ9Y253 713 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 FARSAQ9Y285 508 aaKnown RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 PTRH2Q9Y3E5 179 aaKnown RBP8.78□□□□□ -1
TRIM28-208ENST00000597172 GMEB1Q9Y692 573 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 SCN2AQ99250 2005 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 IGHV3-20A0A0C4DH32 117 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 CLIC1O00299 241 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 UPK1AO00322 258 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 OR10H2O60403 315 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 PLOD3O60568 738 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 HNRNPCL1O60812 293 aaKnown RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 NME6O75414 186 aaPredicted RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 ANP32DO95626 131 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 CLPSP04118 112 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 IFNA16P05015 189 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 CD63P08962 238 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 NT5EP21589 574 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 GPC1P35052 558 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 MC3RP41968 323 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 CCT3P49368 545 aaKnown RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 GZMMP51124 257 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 MVDP53602 400 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 RPS18P62269 152 aaKnown RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 MRPS35P82673 323 aaKnown RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 MXRA7P84157 204 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 DUSP8Q13202 625 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 RABL3Q5HYI8 236 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 C6orf120Q7Z4R8 191 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 DEFB107AQ8IZN7 70 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 PGAM4Q8N0Y7 254 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 C10orf111Q8N326 155 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 OR2L13Q8N349 312 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 OR5AK3PQ8NH89 298 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 ZFP28Q8NHY6 868 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF675Q8TD23 568 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 RIT1Q92963 219 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 TMEM125Q96AQ2 219 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 GIMAP5Q96F15 307 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 MAGED4Q96JG8 741 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 DGAT2Q96PD7 388 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 WDR77Q9BQA1 342 aaPredicted RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 CPPED1Q9BRF8 314 aaPredicted RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 SLC35A5Q9BS91 424 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 CRB3Q9BUF7 120 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 CADM1Q9BY67 442 aaKnown RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 LRMDAQ9H2I8 198 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 TPT1P8Q9HAU6 139 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 NEUROD4Q9HD90 331 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 PNO1Q9NRX1 252 aaKnown RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 LUZP4Q9P127 313 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 TMEM181Q9P2C4 612 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 GMPR2Q9P2T1 348 aaKnown RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 NXT1Q9UKK6 140 aaKnown RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 TCFL5Q9UL49 500 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 C19orf53Q9UNZ5 99 aaPredicted RBP8.77□□□□□ -1.01
TRIM28-208ENST00000597172 SNX8Q9Y5X2 465 aa8.77□□□□□ -1.01
TRIM28-208ENST00000597172 A0A087WV62 115 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms