RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 ART1P52961 327 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 WNT3P56703 355 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 ZNF763Q0D2J5 394 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 MYBPHQ13203 477 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 HEPACAMQ14CZ8 416 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 KIAA0040Q15053 153 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 TTMPQ5BVD1 217 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 C1orf185Q5T7R7 199 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 WLSQ5T9L3 541 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 NOXRED1Q6NXP6 359 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 Q6ZSR9 355 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 TRIM42Q8IWZ5 723 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 FAM13CQ8NE31 585 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 OR10G3Q8NGC4 313 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 OR2T11Q8NH01 316 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 NUBPLQ8TB37 319 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 PAQR8Q8TEZ7 354 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 C16orf78Q8WTQ4 265 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 SARAFQ96BY9 339 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 ART5Q96L15 291 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 GAL3ST4Q96RP7 486 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 EBPLQ9BY08 206 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 SLC6A15Q9H2J7 730 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 ACBD3Q9H3P7 528 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 LIME1Q9H400 295 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 HAO1Q9UJM8 370 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 CES1P1Q9UKY3 287 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 PSME2Q9UL46 239 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 WBP11Q9Y2W2 641 aaKnown RBP11.47□□□□□ -0.57
UPF1-203ENST00000594504 TMED5Q9Y3A6 229 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 RAP2CQ9Y3L5 183 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 LRBAP50851 2863 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 CENPEQ02224 2701 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 INTS1Q8N201 2190 aaKnown RBP11.47□□□□□ -0.57
UPF1-203ENST00000594504 FREM3P0C091 2139 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 ARHGAP21Q5T5U3 1957 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 LRRC3CA6NJW4 275 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 LSM1O15116 133 aaKnown RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 SASH3O75995 380 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 DNAJA1P31689 397 aaKnown RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 ALDH9A1P49189 494 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 XKP51811 444 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 IST1P53990 364 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 KCNJ2P63252 427 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 BST1Q10588 318 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 SPRED3Q2MJR0 410 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 XKR7Q5GH72 579 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 ATG16L1Q676U5 607 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 SEM1Q6ZVN7 128 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 IKBIPQ70UQ0 350 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 WDR53Q7Z5U6 358 aaPredicted RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 MMP21Q8N119 569 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 ZNF781Q8N8C0 355 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 SLC22A8Q8TCC7 542 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 KLHL29Q96CT2 875 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 SPACA9Q96E40 222 aaPredicted RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 FCRL1Q96LA6 429 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 PPP3R2Q96LZ3 170 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 SORT1Q99523 831 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 C20orf27Q9GZN8 174 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 ZNF703Q9H7S9 590 aaPredicted RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 ZNF395Q9H8N7 513 aaPredicted RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 ZFP64Q9NPA5 681 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 MYNNQ9NPC7 610 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 EHD3Q9NZN3 535 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 KCNN3Q9UGI6 736 aa11.46□□□□□ -0.57
UPF1-203ENST00000594504 CNOT11Q9UKZ1 510 aaKnown RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 POLR3HQ9Y535 204 aaPredicted RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 CHCHD2Q9Y6H1 151 aaPredicted RBP11.46□□□□□ -0.57
UPF1-203ENST00000594504 AKAP9Q99996 3911 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 UQCRHLA0A096LP55 91 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 HCN1O60741 890 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 WDR1O75083 606 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 SKAP2O75563 359 aaPredicted RBP11.45□□□□□ -0.58
UPF1-203ENST00000594504 ERAL1O75616 437 aaKnown RBP11.45□□□□□ -0.58
UPF1-203ENST00000594504 CT62P0C5K7 136 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 CPMP14384 443 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 PORP16435 677 aaPredicted RBP11.45□□□□□ -0.58
UPF1-203ENST00000594504 SSTR4P31391 388 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 RPL14P50914 215 aaKnown RBP11.45□□□□□ -0.58
UPF1-203ENST00000594504 SLC37A1P57057 533 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 RPL38P63173 70 aaKnown RBP11.45□□□□□ -0.58
UPF1-203ENST00000594504 GALNTL6Q49A17 601 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 ATP6AP1LQ52LC2 224 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 BICRALQ6AI39 1079 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 ARSKQ6UWY0 536 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 RNF111Q6ZNA4 994 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 SLC29A4Q7RTT9 530 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 ZZZ3Q8IYH5 903 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 SAMD14Q8IZD0 417 aaPredicted RBP11.45□□□□□ -0.58
UPF1-203ENST00000594504 FBXW8Q8N3Y1 598 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 SLC15A4Q8N697 577 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.45□□□□□ -0.58
UPF1-203ENST00000594504 RIT1Q92963 219 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 FBXL20Q96IG2 436 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 WWTR1Q9GZV5 400 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 THAP1Q9NVV9 213 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 HEY2Q9UBP5 337 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 UTS2RQ9UKP6 389 aa11.45□□□□□ -0.58
UPF1-203ENST00000594504 BOKQ9UMX3 212 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms