RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 CEACAM4O75871 244 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 SOX30O94993 753 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 NPPAP01160 153 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ALOX5P09917 674 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 DRD5P21918 477 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 MATN1P21941 496 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 PTPN6P29350 595 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 SSR4P51571 173 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 MLF1P58340 268 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ART3Q13508 389 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 COL28A1Q2UY09 1125 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 TRMT5Q32P41 509 aaKnown RBP12.61□□□□□ -0.39
VMP1-210ENST00000589823 PIGGQ5H8A4 983 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ACER2Q5QJU3 275 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 CDC73Q6P1J9 531 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ISLR2Q6UXK2 745 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 DLEU7Q6UYE1 221 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 SLC44A2Q8IWA5 706 aaPredicted RBP12.61□□□□□ -0.39
VMP1-210ENST00000589823 ARMC10Q8N2F6 343 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ZNF441Q8N8Z8 693 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 FBXO30Q8TB52 745 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ADAMTS15Q8TE58 950 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ZFP90Q8TF47 636 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ADIPOR1Q96A54 375 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 HSPBAP1Q96EW2 488 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 C16orf58Q96GQ5 468 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 BTBD9Q96Q07 612 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 LMF2Q9BU23 707 aaKnown RBP12.61□□□□□ -0.39
VMP1-210ENST00000589823 NXF5Q9H1B4 397 aaKnown RBP12.61□□□□□ -0.39
VMP1-210ENST00000589823 RAD21L1Q9H4I0 556 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 EPS8L2Q9H6S3 715 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 ZNF552Q9H707 407 aaPredicted RBP12.61□□□□□ -0.39
VMP1-210ENST00000589823 TPT1P8Q9HAU6 139 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 Q9N2J8 555 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 RYDENQ9NUL5 291 aaKnown RBP12.61□□□□□ -0.39
VMP1-210ENST00000589823 ARL8BQ9NVJ2 186 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 GPATCH2Q9NW75 528 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 STMN3Q9NZ72 180 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 OR10H1Q9Y4A9 318 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 PCDHGB3Q9Y5G1 929 aa12.61□□□□□ -0.39
VMP1-210ENST00000589823 PCDHGA9Q9Y5G4 932 aaKnown RBP12.61□□□□□ -0.39
VMP1-210ENST00000589823 TMEM200CA6NKL6 621 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 DUXAA6NLW8 204 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 EVPLLA8MZ36 301 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 OR2J2O76002 312 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 ACP2P11117 423 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 ESRRAP11474 423 aaPredicted RBP12.6□□□□□ -0.39
VMP1-210ENST00000589823 HOXB9P17482 250 aaPredicted RBP12.6□□□□□ -0.39
VMP1-210ENST00000589823 GABRA3P34903 492 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 SOX11P35716 441 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 KRT20P35900 424 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 KHKP50053 298 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 NUDT2P50583 147 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 MNAT1P51948 309 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 POLE2P56282 527 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 PSPHP78330 225 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 TXNL4AP83876 142 aaKnown RBP12.6□□□□□ -0.39
VMP1-210ENST00000589823 RHDQ02161 417 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 NNATQ16517 81 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 C16orf47Q6ZP98 133 aaPredicted RBP12.6□□□□□ -0.39
VMP1-210ENST00000589823 LINC00696Q6ZRV3 163 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 WDR53Q7Z5U6 358 aaPredicted RBP12.6□□□□□ -0.39
VMP1-210ENST00000589823 RNF130Q86XS8 419 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 SLC15A4Q8N697 577 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 PNPT1Q8TCS8 783 aaKnown RBP12.6□□□□□ -0.39
VMP1-210ENST00000589823 GPR151Q8TDV0 419 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 ROPN1LQ96C74 230 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 LRRC58Q96CX6 371 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 AURKBQ96GD4 344 aaPredicted RBP12.6□□□□□ -0.39
VMP1-210ENST00000589823 LMF1Q96S06 567 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 RASL10BQ96S79 203 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 STACQ99469 402 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 CGREF1Q99674 301 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 PIGUQ9H490 435 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 DUSP22Q9NRW4 184 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 GIN1Q9NXP7 522 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 SLC25A37Q9NYZ2 338 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 VAPAQ9P0L0 249 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 CORO2BQ9UQ03 480 aa12.6□□□□□ -0.39
VMP1-210ENST00000589823 GPR55Q9Y2T6 319 aaPredicted RBP12.6□□□□□ -0.39
VMP1-210ENST00000589823 PTPRQQ9UMZ3 2332 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 TRBV5-3A0A0A0MS03 114 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 CCT8L1PA6NM43 557 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 TO15178 435 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 NKX2-2O95096 273 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 AGR2O95994 175 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 CT45A8P0DMV1 189 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 CT45A9P0DMV2 189 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 CASRP41180 1078 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 CRATP43155 626 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 MAGEA8P43361 318 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 CPA2P48052 419 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 TMED10P49755 219 aaKnown RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 CASP9P55211 416 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 CORO7P57737 925 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 RPS26P62854 115 aaKnown RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 MXRA7P84157 204 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 PSG6Q00889 435 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 PLCXD2Q0VAA5 305 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 MFAP5Q13361 173 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms