RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 KCNJ5P48544 419 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 PDX1P52945 283 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 MAPK10P53779 464 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 CHRNEQ04844 493 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 MAP4K2Q12851 820 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 SF3A2Q15428 464 aaKnown RBP9.81□□□□□ -0.84
SS18-217ENST00000580958 DUSP7Q16829 419 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 EXOSC6Q5RKV6 272 aaKnown RBP9.81□□□□□ -0.84
SS18-217ENST00000580958 MFSD4BQ5TF39 518 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 PRAMEF8Q5VWM4 474 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 PRAMEF7Q5VXH5 474 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 ANKRD34AQ69YU3 496 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 LAIR1Q6GTX8 287 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 HEPHL1Q6MZM0 1159 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 DBX2Q6ZNG2 339 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 HMGN2P46Q86SG4 172 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 KRT73Q86Y46 540 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 GALNT12Q8IXK2 581 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 VWA5B2Q8N398 1253 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 OR52R1Q8NGF1 315 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 MAGEE2Q8TD90 523 aaPredicted RBP9.81□□□□□ -0.84
SS18-217ENST00000580958 RHBDD1Q8TEB9 315 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 ATOH1Q92858 354 aaPredicted RBP9.81□□□□□ -0.84
SS18-217ENST00000580958 RIT1Q92963 219 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 TSLPQ969D9 159 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 SDCCAG3Q96C92 435 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 RBM18Q96H35 190 aaKnown RBP9.81□□□□□ -0.84
SS18-217ENST00000580958 PTCHD1Q96NR3 888 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 ZNF300Q96RE9 604 aaPredicted RBP9.81□□□□□ -0.84
SS18-217ENST00000580958 PRR14Q9BWN1 585 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 SLC7A5P2Q9GIP4 190 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 SLC38A1Q9H2H9 487 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 PIGUQ9H490 435 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 Q9H521 79 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 THSD1Q9NS62 852 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 EXD2Q9NVH0 621 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 CALML5Q9NZT1 146 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 SEC14L3Q9UDX4 400 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 FTSJ1Q9UET6 329 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 SRPK3Q9UPE1 567 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 LIPT1Q9Y234 373 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 MMACHCQ9Y4U1 282 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 U3KQV3 271 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 CACNA1HO95180 2353 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 MUC3AQ02505 3323 aa9.81□□□□□ -0.84
SS18-217ENST00000580958 A8MVJ9 347 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 FLRT2O43155 660 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 DENRO43583 198 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 COQ9O75208 318 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 ZIC2O95409 532 aaPredicted RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 TIAF1O95411 115 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 IFNA16P05015 189 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 ALPPP05187 535 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 FESP07332 822 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 ETS2P15036 469 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 S1PR1P21453 382 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 FPR1P21462 350 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 SSTR4P31391 388 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 DNAJA1P31689 397 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 YAP1P46937 504 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 ALDH3A2P51648 485 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 HPCAP84074 193 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 MED21Q13503 144 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 SERTAD2Q14140 314 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 ZNF267Q14586 743 aaPredicted RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 PUM1Q14671 1186 aaKnown RBP eCLIP9.8□□□□□ -0.84
SS18-217ENST00000580958 ARHGAP11BQ3KRB8 267 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 VWA2Q5GFL6 755 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 ZCCHC12Q6PEW1 402 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 SHQ1Q6PI26 577 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 QSOX2Q6ZRP7 698 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 MED25Q71SY5 747 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 COX15Q7KZN9 410 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 B3GNT8Q7Z7M8 397 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 CARM1Q86X55 608 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 HIPK1Q86Z02 1210 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 ZDHHC13Q8IUH4 622 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 CDRT4Q8N9R6 151 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 VANGL1Q8TAA9 524 aaPredicted RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 APOBEC4Q8WW27 367 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 PIK3R3Q92569 461 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 PROX1Q92786 737 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 TRNT1Q96Q11 434 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 OR1F2PQ96R84 312 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 BARD1Q99728 777 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 PELOQ9BRX2 385 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 SPATA5L1Q9BVQ7 753 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 BTBD2Q9BX70 525 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 OSBPL11Q9BXB4 747 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 PINK1Q9BXM7 581 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 AMBRA1Q9C0C7 1298 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 GABARAPL1Q9H0R8 117 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 REEP1Q9H902 201 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 SMURF2Q9HAU4 748 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 FOLH1BQ9HBA9 442 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 OCIAD1Q9NX40 245 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 NDUFAF4Q9P032 175 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 IFT80Q9P2H3 777 aaPredicted RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 ERVK-19Q9WJR5 959 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 SH3GLB1Q9Y371 365 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms