RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 VPS4AQ9UN37 437 aa14.4□□□□□ -0.1
SS18-216ENST00000580751 CFL2Q9Y281 166 aa14.4□□□□□ -0.1
SS18-216ENST00000580751 BOD1L1Q8NFC6 3051 aa14.4□□□□□ -0.1
SS18-216ENST00000580751 A0A087WV62 115 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 PLOD2O00469 737 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 ANP32DO95626 131 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 HOXB9P17482 250 aaPredicted RBP14.39□□□□□ -0.11
SS18-216ENST00000580751 SLC6A2P23975 617 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 PTPN6P29350 595 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 EEFSECP57772 596 aaKnown RBP14.39□□□□□ -0.11
SS18-216ENST00000580751 RUNDC3AQ59EK9 446 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 B3GNTL1Q67FW5 361 aaPredicted RBP14.39□□□□□ -0.11
SS18-216ENST00000580751 BHLHB9Q6PI77 547 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 TMEM64Q6YI46 380 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 ZNF551Q7Z340 670 aaPredicted RBP14.39□□□□□ -0.11
SS18-216ENST00000580751 LSM14AQ8ND56 463 aaKnown RBP14.39□□□□□ -0.11
SS18-216ENST00000580751 FBXO27Q8NI29 283 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 DOK4Q8TEW6 326 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 KAT2AQ92830 837 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 LMF1Q96S06 567 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 OR10A5Q9H207 317 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 RAD21L1Q9H4I0 556 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 RYDENQ9NUL5 291 aaKnown RBP14.39□□□□□ -0.11
SS18-216ENST00000580751 DDX18Q9NVP1 670 aaKnown RBP14.39□□□□□ -0.11
SS18-216ENST00000580751 BCAP29Q9UHQ4 241 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 TP53TG5Q9Y2B4 290 aa14.39□□□□□ -0.11
SS18-216ENST00000580751 EVPLLA8MZ36 301 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 CDK2AP1O14519 115 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 ATXN7O15265 892 aaPredicted RBP14.38□□□□□ -0.11
SS18-216ENST00000580751 COQ9O75208 318 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 CBX7O95931 251 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 CLPSP04118 112 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 ABCB1P08183 1280 aaPredicted RBP14.38□□□□□ -0.11
SS18-216ENST00000580751 NQO1P15559 274 aaKnown RBP14.38□□□□□ -0.11
SS18-216ENST00000580751 S1PR1P21453 382 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 UQCRC2P22695 453 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 MC3RP41968 323 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 EBPQ15125 230 aaKnown RBP14.38□□□□□ -0.11
SS18-216ENST00000580751 TRMT12Q53H54 448 aaKnown RBP14.38□□□□□ -0.11
SS18-216ENST00000580751 HLA-DQA1Q5Y7H0 255 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 FCRLBQ6BAA4 426 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 NANOGP8Q6NSW7 305 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 PGM2L1Q6PCE3 622 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 PCSK4Q6UW60 755 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 IGFL2Q6UWQ7 119 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 TMEM107Q6UX40 140 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 IGFL3Q6UXB1 125 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 LINC00696Q6ZRV3 163 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 ASB18Q6ZVZ8 466 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 C9orf40Q8IXQ3 194 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 ZNF615Q8N8J6 731 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 EXD3Q8N9H8 876 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 OR7G2Q8NG99 324 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 OR52R1Q8NGF1 315 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 OR4A15Q8NGL6 344 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 THAP3Q8WTV1 239 aaPredicted RBP14.38□□□□□ -0.11
SS18-216ENST00000580751 NUDT8Q8WV74 236 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 ELP4Q96EB1 424 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 GAL3ST4Q96RP7 486 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 THTPAQ9BU02 230 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 SPATA9Q9BWV2 254 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 WWTR1Q9GZV5 400 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 RNF32Q9H0A6 362 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 NANOGQ9H9S0 305 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 MYOTQ9UBF9 498 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 PRODH2Q9UF12 536 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 L3MBTL1Q9Y468 752 aa14.38□□□□□ -0.11
SS18-216ENST00000580751 PRKNO60260 465 aaPredicted RBP14.37□□□□□ -0.11
SS18-216ENST00000580751 KRT75O95678 551 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 HSD17B1P14061 328 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 SOX18P35713 384 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 MLF1P58340 268 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 HBA1P69905 142 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 DMTNQ08495 405 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 EXOSC7Q15024 291 aaKnown RBP14.37□□□□□ -0.11
SS18-216ENST00000580751 PIGGQ5H8A4 983 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 FHL5Q5TD97 284 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 ZNF621Q6ZSS3 439 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 ANKRD46Q86W74 232 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 SLC15A3Q8IY34 581 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 OR2L13Q8N349 312 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 FBXW8Q8N3Y1 598 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 ZADH2Q8N4Q0 377 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 C17orf47Q8NEP4 570 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 TNIP2Q8NFZ5 429 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 C16orf52Q8NHV5 167 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 SFXN5Q8TD22 340 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 CDRT15Q96T59 188 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 INPP5KQ9BT40 448 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 SLC25A18Q9H1K4 315 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 MUC13Q9H3R2 512 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 CDCP1Q9H5V8 836 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 STMN3Q9NZ72 180 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 VAPAQ9P0L0 249 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 SLAMF8Q9P0V8 285 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.37□□□□□ -0.11
SS18-216ENST00000580751 C19orf53Q9UNZ5 99 aaPredicted RBP14.37□□□□□ -0.11
SS18-216ENST00000580751 YARS2Q9Y2Z4 477 aaKnown RBP14.37□□□□□ -0.11
SS18-216ENST00000580751 PCDHB14Q9Y5E9 798 aa14.37□□□□□ -0.11
SS18-216ENST00000580751 CPAMD8Q8IZJ3 1885 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms