RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZIC2O95409 532 aaPredicted RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 SPINK2P20155 84 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 PSG6Q00889 435 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 MYBPC3Q14896 1274 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 NPSR1Q6W5P4 371 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 CPEB2Q7Z5Q1 589 aaKnown RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 NLGN4XQ8N0W4 816 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 ZSCAN1Q8NBB4 408 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 NLGN4YQ8NFZ3 816 aaPredicted RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 FAM162AQ96A26 154 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 VSTM2LQ96N03 204 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 MAGEL2Q9UJ55 1249 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 NXT1Q9UKK6 140 aaKnown RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 FARSAQ9Y285 508 aaKnown RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 SLC28A2O43868 658 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 MGRN1O60291 552 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 OPN1SWP03999 348 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 CHRM4P08173 479 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 GABRA3P34903 492 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 LRRC23Q53EV4 343 aaPredicted RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 ERICH5Q6P6B1 374 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 PAPD4Q6PIY7 484 aaKnown RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 ENPP6Q6UWR7 440 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 PROSER1Q86XN7 944 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 ESX1Q8N693 406 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 SLCO4A1Q96BD0 722 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 LRGUKQ96M69 825 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 NSMCE2Q96MF7 247 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 SPATA9Q9BWV2 254 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 ITPAQ9BY32 194 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 GORASP2Q9H8Y8 452 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 LIN28AQ9H9Z2 209 aaKnown RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 ZNF223Q9UK11 482 aaPredicted RBP23.32■■□□□ 1.32
SHMT1-207ENST00000580002 TCFL5Q9UL49 500 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 HS3ST3B1Q9Y662 390 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 TCRBV3S1A0A5B6 114 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 H0Y3Z8 333 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 TERTO14746 1132 aaKnown RBP23.31■■□□□ 1.32
SHMT1-207ENST00000580002 SERPINA1P01009 418 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 IFI6P09912 130 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 RBMS1P29558 406 aaKnown RBP23.31■■□□□ 1.32
SHMT1-207ENST00000580002 KDELR2P33947 212 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 STAT5AP42229 794 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 POLE2P56282 527 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 ZNF630Q2M218 657 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-207ENST00000580002 OR14A16Q8NHC5 309 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 NRSN2Q9GZP1 204 aa23.31■■□□□ 1.32
SHMT1-207ENST00000580002 A8MVJ9 347 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 TMEM229AB2RXF0 380 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 FCMRO60667 390 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 NR2F1P10589 423 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 FOLR3P41439 243 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 VEZF1Q14119 521 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 GLIPR1L2Q4G1C9 344 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 C9orf40Q8IXQ3 194 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 CDRT4Q8N9R6 151 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 TNIP2Q8NFZ5 429 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 GPR151Q8TDV0 419 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 CANT1Q8WVQ1 401 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 DAZLQ92904 295 aaKnown RBP23.3■■□□□ 1.32
SHMT1-207ENST00000580002 NKD1Q969G9 470 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 ZG16BQ96DA0 208 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 LMF1Q96S06 567 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 PIGUQ9H490 435 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 AKAP13Q12802 2813 aa23.3■■□□□ 1.32
SHMT1-207ENST00000580002 STMND1H3BQB6 276 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 BRINP1O60477 761 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 PRAMEF2O60811 474 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 COQ9O75208 318 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 ALOX5P09917 674 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 DLSTP36957 453 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 RBBP4Q09028 425 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 DNASE1L3Q13609 305 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 OR1N1Q8NGS0 311 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 HOXB13Q92826 284 aaPredicted RBP23.29■■□□□ 1.32
SHMT1-207ENST00000580002 QRSL1Q9H0R6 528 aaKnown RBP23.29■■□□□ 1.32
SHMT1-207ENST00000580002 NKX1-2Q9UD57 310 aaPredicted RBP23.29■■□□□ 1.32
SHMT1-207ENST00000580002 IL17BQ9UHF5 180 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 SAGE2PA6NJ88 616 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 M0QX08 132 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 PGM3O95394 542 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 H6PDO95479 791 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 CELA2AP08217 269 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 RAB40ALP0C0E4 278 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 CT45A8P0DMV1 189 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 CT45A9P0DMV2 189 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 PCBP3P57721 371 aaKnown RBP23.29■■□□□ 1.32
SHMT1-207ENST00000580002 PCOLCEQ15113 449 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 CYP27C1Q4G0S4 372 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 GPAT3Q53EU6 434 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 CT45A2Q5DJT8 189 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 HEPHL1Q6MZM0 1159 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 REEP3Q6NUK4 255 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 FIGNL1Q6PIW4 674 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 KIRREL2Q6UWL6 708 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 RNF111Q6ZNA4 994 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 C16orf47Q6ZP98 133 aaPredicted RBP23.29■■□□□ 1.32
SHMT1-207ENST00000580002 ZAR1Q86SH2 424 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 APCDD1LQ8NCL9 501 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 OR7G1Q8NGA0 311 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms