RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 GPRIN2O60269 458 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 SMPD2O60906 423 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 CLN5O75503 358 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 YEATS4O95619 227 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 SEMA4FO95754 770 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 OLFM2O95897 454 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 HPP00738 406 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 CALCAP01258 141 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 MELTFP08582 738 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 UBTFL1P0CB47 393 aaPredicted RBP4.08□□□□□ -1.76
NUP88-213ENST00000576862 GP9P14770 177 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 RIDAP52758 137 aaKnown RBP4.08□□□□□ -1.76
NUP88-213ENST00000576862 ACY1Q03154 408 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 MXD4Q14582 209 aaPredicted RBP4.08□□□□□ -1.76
NUP88-213ENST00000576862 MEP1BQ16820 701 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 TYSND1Q2T9J0 566 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 BOLA3Q53S33 107 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 HSP90AA5PQ58FG0 334 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 AGAP7PQ5VUJ5 663 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 SEL1L3Q68CR1 1132 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 FBXL16Q8N461 479 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 MRPL43Q8N983 215 aaKnown RBP4.08□□□□□ -1.76
NUP88-213ENST00000576862 RNF149Q8NC42 400 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 OR6C4Q8NGE1 309 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 OR52K1Q8NGK4 314 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 OR4Q3Q8NH05 313 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 SLC5A11Q8WWX8 675 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 SNRNP40Q96DI7 357 aaKnown RBP4.08□□□□□ -1.76
NUP88-213ENST00000576862 NRBF2Q96F24 287 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 CNOT6LQ96LI5 555 aaKnown RBP4.08□□□□□ -1.76
NUP88-213ENST00000576862 UBAC1Q9BSL1 405 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 VIPAS39Q9H9C1 493 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 THYN1Q9P016 225 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 VPS18Q9P253 973 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 ZNF346Q9UL40 294 aaKnown RBP4.08□□□□□ -1.76
NUP88-213ENST00000576862 LIPT1Q9Y234 373 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 SH3GLB1Q9Y371 365 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 AUP1Q9Y679 476 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 ROBO1Q9Y6N7 1651 aa4.08□□□□□ -1.76
NUP88-213ENST00000576862 COL16A1Q07092 1604 aaPredicted RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 GLI3P10071 1580 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 LOC390937A0A1W2PQ73 354 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 SDR42E2A6NKP2 422 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 M0R296 226 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 FBP2O00757 339 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 B4GAT1O43505 415 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 NMT2O60551 498 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 IGKV5-2P06315 115 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 RFC4P35249 363 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 FRKP42685 505 aaPredicted RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 RPS27AP62979 156 aaKnown RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 RBBP4Q09028 425 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 CBX3Q13185 183 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 MAJINQ3KP22 176 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 CCDC40Q4G0X9 1142 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 RFTN2Q52LD8 501 aaPredicted RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 AGAP6Q5VW22 663 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 LEMD1Q68G75 181 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 COPS6Q7L5N1 327 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 BNIPLQ7Z465 357 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 CACUL1Q86Y37 369 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 ELMOD1Q8N336 334 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 SUMF1Q8NBK3 374 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 ZNRF1Q8ND25 227 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 OR1B1Q8NGR6 318 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 OR6F1Q8NGZ6 308 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.07□□□□□ -1.76
NUP88-213ENST00000576862 C8orf76Q96K31 380 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 RCHY1Q96PM5 261 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 ZNF559Q9BR84 538 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 IDI2Q9BXS1 227 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 TEX13AQ9BXU3 409 aaPredicted RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 TMEM206Q9H813 350 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 POLE3Q9NRF9 147 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 DDX18Q9NVP1 670 aaKnown RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 FAM120CQ9NX05 1096 aaKnown RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 IL20Q9NYY1 176 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 PTBP2Q9UKA9 531 aaKnown RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 SPATA2Q9UM82 520 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 EXOC7Q9UPT5 735 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 NIP7Q9Y221 180 aaKnown RBP eCLIP4.07□□□□□ -1.76
NUP88-213ENST00000576862 PIN4Q9Y237 131 aaKnown RBP4.07□□□□□ -1.76
NUP88-213ENST00000576862 EXOC6BQ9Y2D4 811 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 ETV7Q9Y603 341 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 ABCA3Q99758 1704 aa4.07□□□□□ -1.76
NUP88-213ENST00000576862 COL22A1Q8NFW1 1626 aaPredicted RBP4.06□□□□□ -1.76
NUP88-213ENST00000576862 SLIT2O94813 1529 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 KCPQ6ZWJ8 1503 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 JCADQ9P266 1359 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 IBTKQ9P2D0 1353 aaPredicted RBP4.06□□□□□ -1.76
NUP88-213ENST00000576862 DLG5Q8TDM6 1919 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 A0A087WWV3 80 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 A0A087X0K7 114 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 IGLON5A6NGN9 336 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 H0YIV9 168 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 ZNF354AO60765 605 aaPredicted RBP4.06□□□□□ -1.76
NUP88-213ENST00000576862 LETM1O95202 739 aaPredicted RBP4.06□□□□□ -1.76
NUP88-213ENST00000576862 SLC16A8O95907 504 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 HCKP08631 526 aa4.06□□□□□ -1.76
NUP88-213ENST00000576862 ODC1P11926 461 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms