RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ACSS1Q9NUB1 689 aaPredicted RBP15.94■□□□□ 0.14
CLN3-217ENST00000565354 TAS2R9Q9NYW1 312 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 ZNF639Q9UID6 485 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 TMEM200CA6NKL6 621 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 CFLARO15519 480 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 CBX7O95931 251 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 TROVE2P10155 538 aaKnown RBP eCLIP15.93■□□□□ 0.14
CLN3-217ENST00000565354 S1PR1P21453 382 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 MDH1P40925 334 aaKnown RBP15.93■□□□□ 0.14
CLN3-217ENST00000565354 SOX3P41225 446 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 NRG3P56975 720 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 ZNF155Q12901 538 aaPredicted RBP15.93■□□□□ 0.14
CLN3-217ENST00000565354 GSTA3Q16772 222 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 MPEG1Q2M385 716 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 LSM12Q3MHD2 195 aaKnown RBP15.93■□□□□ 0.14
CLN3-217ENST00000565354 PIGGQ5H8A4 983 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 ZNF766Q5HY98 468 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 RIMKLAQ8IXN7 391 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 GPALPP1Q8IXQ4 340 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 OR7G2Q8NG99 324 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 SIGLEC12Q96PQ1 595 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 CCDC28BQ9BUN5 200 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 ITPAQ9BY32 194 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 ANKRA2Q9H9E1 313 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 C3orf14Q9HBI5 128 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 NPHS2Q9NP85 383 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 KLHL1Q9NR64 748 aa15.93■□□□□ 0.14
CLN3-217ENST00000565354 A0A087WV62 115 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 A0A1B0GUH1 482 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 CAPN14A8MX76 684 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 E9PBE3 544 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 PLOD3O60568 738 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 STSP08842 583 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 GPX3P22352 226 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 TRHRP34981 398 aaPredicted RBP15.92■□□□□ 0.14
CLN3-217ENST00000565354 KIR3DL1P43629 444 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 IDH3AP50213 366 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 PRKAG1P54619 331 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 C21orf58P58505 322 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 DCAF7P61962 342 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 SRSF11Q05519 484 aaKnown RBP15.92■□□□□ 0.14
CLN3-217ENST00000565354 DPY19L1Q2PZI1 675 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 SPDYE7PQ495Y7 208 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 ZNF468Q5VIY5 522 aaPredicted RBP15.92■□□□□ 0.14
CLN3-217ENST00000565354 TMEM198Q66K66 360 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 SPINK14Q6IE38 97 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 SLC15A4Q8N697 577 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 TMEM178AQ8NBL3 297 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 FAM98AQ8NCA5 519 aaKnown RBP15.92■□□□□ 0.14
CLN3-217ENST00000565354 VPS37AQ8NEZ2 397 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 FAR1Q8WVX9 515 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 OR5P2Q8WZ92 322 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 TP53INP1Q96A56 240 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 COQ8BQ96D53 544 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 ELP4Q96EB1 424 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 RILPQ96NA2 401 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 EBF4Q9BQW3 602 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 SIKE1Q9BRV8 207 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 TIMMDC1Q9NPL8 285 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 DCTN4Q9UJW0 460 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 PCDHGB4Q9UN71 923 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 SNX8Q9Y5X2 465 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 PCNX1Q96RV3 2341 aa15.92■□□□□ 0.14
CLN3-217ENST00000565354 PLOD2O00469 737 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 SLC25A12O75746 678 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 OR6B1O95007 311 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 ABCB1P08183 1280 aaPredicted RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 S100A3P33764 101 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 SOAT1P35610 550 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 FRKP42685 505 aaPredicted RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 TMED10P49755 219 aaKnown RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 CDK9P50750 372 aaKnown RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 UFM1P61960 85 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 MLC1Q15049 377 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 ZNHIT3Q15649 155 aaPredicted RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 NNATQ16517 81 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 MAPKAPK3Q16644 382 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 PDCD4Q53EL6 469 aaKnown RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 ANXA8L1Q5VT79 327 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 OR4F3Q6IEY1 312 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 SLC25A25Q6KCM7 469 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 CAMKMTQ7Z624 323 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 FJX1Q86VR8 437 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 MIER2Q8N344 545 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 SIMC1Q8NDZ2 872 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 NUDT8Q8WV74 236 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 TESCQ96BS2 214 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 LCORQ96JN0 433 aaPredicted RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 FOLH1BQ9HBA9 442 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 RYDENQ9NUL5 291 aaKnown RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 FGFR1OP2Q9NVK5 253 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 C19orf53Q9UNZ5 99 aaPredicted RBP15.91■□□□□ 0.14
CLN3-217ENST00000565354 GPR45Q9Y5Y3 372 aa15.91■□□□□ 0.14
CLN3-217ENST00000565354 A0A0G2JND7 137 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 UPK1AO00322 258 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 EMC8O43402 210 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 ERN1O75460 977 aaKnown RBP15.9■□□□□ 0.14
CLN3-217ENST00000565354 SLC22A3O75751 556 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 C6orf47O95873 294 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 SP1P08047 785 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms