RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 KDM4BO94953 1096 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 APOL3O95236 402 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 FGF2P09038 288 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 TNFRSF1BP20333 461 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 ACRV1P26436 265 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 PTPN6P29350 595 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 EVX1P49640 407 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 OPCMLQ14982 345 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 CD276Q5ZPR3 534 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 C3P1Q6ZMU1 363 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 OR2T35Q8NGX2 323 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 AP3S1Q92572 193 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 POP5Q969H6 163 aaKnown RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 VOPP1Q96AW1 172 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 SENP5Q96HI0 755 aaPredicted RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 IGFLR1Q9H665 355 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 HS3ST2Q9Y278 367 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 CCL27Q9Y4X3 112 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 TNRC18O15417 2968 aaPredicted RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 MOSPD3O75425 235 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 AQP1P29972 269 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 SPAM1P38567 509 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 PTGES3Q15185 160 aaKnown RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 SMAD2Q15796 467 aaKnown RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 SBSNQ6UWP8 590 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 TSEN54Q7Z6J9 526 aaKnown RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 MYLIPQ8WY64 445 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 TM9SF4Q92544 642 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 GTPBP3Q969Y2 492 aaKnown RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 ZNF707Q96C28 371 aaPredicted RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 ERMAPQ96PL5 475 aaPredicted RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 CLN6Q9NWW5 311 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 NUDT4Q9NZJ9 180 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 PFDN2Q9UHV9 154 aa12.56□□□□□ -0.4
CLK3-206ENST00000562078 MRPS23Q9Y3D9 190 aaKnown RBP12.56□□□□□ -0.4
CLK3-206ENST00000562078 PLXNA2O75051 1894 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 ZNF197O14709 1029 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 BTCP35070 178 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 BDKRB1P46663 353 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 ATP12AP54707 1039 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 DEFA5Q01523 94 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 VMACQ2NL98 169 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 SGO1Q5FBB7 561 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 LRIF1Q5T3J3 769 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 CRTC1Q6UUV9 634 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 ALKAL2Q6UX46 152 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 USP45Q70EL2 814 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 CBLL1Q75N03 491 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 GPR26Q8NDV2 337 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 OR5T2Q8NGG2 359 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 TMEM163Q8TC26 289 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 LRRC46Q96FV0 321 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 SCRN2Q96FV2 425 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 KCTD7Q96MP8 289 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 DMRTA2Q96SC8 542 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 ABCG8Q9H221 673 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 ABCG5Q9H222 651 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 GSN-AS1Q9NRJ2 163 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 SLC25A13Q9UJS0 675 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 HCN2Q9UL51 889 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 SNX11Q9Y5W9 270 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 REV3LO60673 3130 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 TRBV23-1A0A0A0MS06 115 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 TRBV5-4A0A0C4DH59 114 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 SGCEO43556 437 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 SLC25A14O95258 325 aaPredicted RBP12.55□□□□□ -0.4
CLK3-206ENST00000562078 KCNK5O95279 499 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 TFPIP10646 304 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 SELLP14151 372 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 CEBPBP17676 345 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 RAB13P51153 203 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 CDC42P60953 191 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 KCNJ10P78508 379 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 EXOC3L2Q2M3D2 409 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 Q6ZVU0 165 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 NXPE1Q8N323 547 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 MOSPD2Q8NHP6 518 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 TEX47Q8TBZ9 253 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 NSMAFQ92636 917 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 APOL5Q9BWW9 433 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 KCNH6Q9H252 994 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 CD93Q9NPY3 652 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 TDP1Q9NUW8 608 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 PHF11Q9UIL8 331 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 POMT2Q9UKY4 750 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 ZFR2Q9UPR6 939 aaKnown RBP12.55□□□□□ -0.4
CLK3-206ENST00000562078 SLC9A8Q9Y2E8 581 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 POFUT2Q9Y2G5 429 aa12.55□□□□□ -0.4
CLK3-206ENST00000562078 NUP210Q8TEM1 1887 aaPredicted RBP12.55□□□□□ -0.4
CLK3-206ENST00000562078 MEIKINA0A087WXM9 373 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 TEX13CA0A0J9YWL9 993 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 PQLC2LA1A4F0 135 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 AIPO00170 330 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 OR7A17O14581 309 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 GUCA1CO95843 209 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 ADRB1P08588 477 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 HOXB9P17482 250 aaPredicted RBP12.54□□□□□ -0.4
CLK3-206ENST00000562078 CNR2P34972 360 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 ALDH9A1P49189 494 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 CRYBA2P53672 197 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms