RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 HMOX2P30519 316 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 ASCL1P50553 236 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 RAE1P78406 368 aaKnown RBP17.32■□□□□ 0.36
VPS35-202ENST00000561713 RASA2Q15283 850 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 SCIMPQ6UWF3 145 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 YRDCQ86U90 279 aaKnown RBP17.32■□□□□ 0.36
VPS35-202ENST00000561713 PACS2Q86VP3 889 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 OR9A2Q8NGT5 310 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 CDC26Q8NHZ8 85 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 KAT2AQ92830 837 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 RNASE6Q93091 150 aaKnown RBP17.32■□□□□ 0.36
VPS35-202ENST00000561713 ZNF681Q96N22 645 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 ZNF382Q96SR6 550 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 TIMP4Q99727 224 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 FAIM2Q9BWQ8 316 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 OSBPL11Q9BXB4 747 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 UGT2B28Q9BY64 529 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 SERHLQ9NQF3 203 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 KLRF1Q9NZS2 232 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 ZNF639Q9UID6 485 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 TIMM22Q9Y584 194 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 PCDHGB3Q9Y5G1 929 aa17.32■□□□□ 0.36
VPS35-202ENST00000561713 PCNX3Q9H6A9 2034 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 C17orf51A8MQB3 221 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 RIPK2O43353 540 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 RAF1P04049 648 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 HPNP05981 417 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 FAM153BP0C7A2 387 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 TAC1P20366 129 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 TCEA1P23193 301 aaKnown RBP17.31■□□□□ 0.36
VPS35-202ENST00000561713 TACR1P25103 407 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 PTGDSP41222 190 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 AGFG1P52594 562 aaKnown RBP17.31■□□□□ 0.36
VPS35-202ENST00000561713 MAP4K2Q12851 820 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 DAZAP2Q15038 168 aaPredicted RBP17.31■□□□□ 0.36
VPS35-202ENST00000561713 DEFB113Q30KQ7 82 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 FAM153CQ494X1 144 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 POMZP3Q6PJE2 187 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 PLXDC2Q6UX71 529 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 BIVMQ86UB2 503 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 FAM83FQ8NEG4 500 aaPredicted RBP17.31■□□□□ 0.36
VPS35-202ENST00000561713 C17orf47Q8NEP4 570 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 RDH11Q8TC12 318 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 APIPQ96GX9 242 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 TMEM41AQ96HV5 264 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 LCORQ96JN0 433 aaPredicted RBP17.31■□□□□ 0.36
VPS35-202ENST00000561713 VPS29Q9UBQ0 182 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 TBK1Q9UHD2 729 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 DLGAP4Q9Y2H0 992 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 FBN3Q75N90 2809 aa17.31■□□□□ 0.36
VPS35-202ENST00000561713 GNG14A0A1W2PPG7 69 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 PRAMEF25A6NGN4 478 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 SNPHO15079 494 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 SNX4O95219 450 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 KRT6AP02538 564 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 KRT6BP04259 564 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 RHOXF2BP0C7M4 288 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 BMP7P18075 431 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 CEACAM8P31997 349 aaPredicted RBP17.3■□□□□ 0.36
VPS35-202ENST00000561713 KRT6CP48668 564 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 EMDP50402 254 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 ZNF136P52737 540 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 CORO7P57737 925 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 RPP38P78345 283 aaKnown RBP17.3■□□□□ 0.36
VPS35-202ENST00000561713 BTKQ06187 659 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 CSTF3Q12996 717 aaKnown RBP17.3■□□□□ 0.36
VPS35-202ENST00000561713 KEAP1Q14145 624 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 FBXL19-AS1Q494R0 122 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 GLE1Q53GS7 698 aaKnown RBP17.3■□□□□ 0.36
VPS35-202ENST00000561713 ZNF628Q5EBL2 1059 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 FBXW10Q5XX13 1052 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 TIGD3Q6B0B8 471 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 CCDC116Q8IYX3 515 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 LRRN4CLQ8ND94 238 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 METTL6Q8TCB7 284 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 TMBIM1Q969X1 311 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 CTHRC1Q96CG8 243 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 LRRC46Q96FV0 321 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 TRIB1Q96RU8 372 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 SECISBP2Q96T21 854 aaKnown RBP17.3■□□□□ 0.36
VPS35-202ENST00000561713 RHOXF2Q9BQY4 288 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 PRDM14Q9GZV8 571 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 EPB41L4BQ9H329 900 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 MCM8Q9UJA3 840 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 ZNF780BQ9Y6R6 833 aa17.3■□□□□ 0.36
VPS35-202ENST00000561713 EPPINO95925 133 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 PYGBP11216 843 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 ATP5F1P24539 256 aaPredicted RBP17.29■□□□□ 0.36
VPS35-202ENST00000561713 NAGLUP54802 743 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 FOXA1P55317 472 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 VASNQ6EMK4 673 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 NPSR1Q6W5P4 371 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 TIFABQ6ZNK6 161 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 LACC1Q8IV20 430 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 OR1J4Q8NGS1 313 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 LINC01560Q8TB33 94 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 ZNF629Q9UEG4 869 aaPredicted RBP17.29■□□□□ 0.36
VPS35-202ENST00000561713 CFL2Q9Y281 166 aa17.29■□□□□ 0.36
VPS35-202ENST00000561713 TUBAL3A6NHL2 446 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 AHRRA9YTQ3 701 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms