RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	PLLP	Q9Y342	182 aa		12.89	□□□□□ -0.35
TPM1-223	ENST00000560445	HRH3	Q9Y5N1	445 aa		12.89	□□□□□ -0.35
TPM1-223	ENST00000560445	ADGRG4	Q8IZF6	3080 aa		12.89	□□□□□ -0.35
TPM1-223	ENST00000560445	EXPH5	Q8NEV8	1989 aa		12.89	□□□□□ -0.35
TPM1-223	ENST00000560445		A0A0G2JNJ9	132 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	TTC36	A6NLP5	189 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	COPE	O14579	308 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	SNPH	O15079	494 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	PLOD3	O60568	738 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	RSL1D1	O76021	490 aa	Known RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	CBX7	O95931	251 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	IFI6	P09912	130 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	NEFH	P12036	1026 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	DDC	P20711	480 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	ENDOU	P21128	410 aa	Known RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	CRHR1	P34998	444 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	TIMP3	P35625	211 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	PSMD4	P55036	377 aa	Known RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	TFF3	Q07654	80 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	CRYZ	Q08257	329 aa	Known RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	MGAT2	Q10469	447 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	EXOSC7	Q15024	291 aa	Known RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	NNAT	Q16517	81 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	ACSF3	Q4G176	576 aa	Predicted RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	ZNF628	Q5EBL2	1059 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	VASN	Q6EMK4	673 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	AAGAB	Q6PD74	315 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	FAM111B	Q6SJ93	734 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	TMEM64	Q6YI46	380 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	FRMD7	Q6ZUT3	714 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	PRR22	Q8IZ63	422 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	RIBC1	Q8N443	379 aa	Predicted RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	C16orf78	Q8WTQ4	265 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	EXOSC8	Q96B26	276 aa	Known RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	SLC35A4	Q96G79	324 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	ZNF681	Q96N22	645 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	C3orf14	Q9HBI5	128 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	SDHAF3	Q9NRP4	125 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445		Q9UFV3	132 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	GPR55	Q9Y2T6	319 aa	Predicted RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	OR10H1	Q9Y4A9	318 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	ANKHD1	Q8IWZ3	2542 aa	Known RBP	12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	HCFC1	P51610	2035 aa		12.88	□□□□□ -0.35
TPM1-223	ENST00000560445	CCDC168	Q8NDH2	2452 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	ARHGAP21	Q5T5U3	1957 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445		A0A087WV62	115 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445		A0A1B0GTL3	188 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445		A0A1W2PS29	197 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	CD8B2	A6NJW9	211 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	RGS14	O43566	566 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	ERN1	O75460	977 aa	Known RBP	12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	REM1	O75628	298 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	LRAT	O95237	230 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	CYP4B1	P13584	511 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	CPA3	P15088	417 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	PCSK2	P16519	638 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	PTPN6	P29350	595 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	CLK3	P49761	638 aa	Known RBP	12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	EMD	P50402	254 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	ASCL1	P50553	236 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	CEBPE	Q15744	281 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	TCHHL1	Q5QJ38	904 aa	Predicted RBP	12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	NSUN5P2	Q63ZY6	315 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	RTL6	Q6ICC9	239 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	TRIM46	Q7Z4K8	759 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	KIF18B	Q86Y91	864 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	CCDC116	Q8IYX3	515 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	RPRML	Q8N4K4	120 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	OR14L1P	Q8NHC6	308 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	HGD	Q93099	445 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	UCN3	Q969E3	161 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	ABTB1	Q969K4	478 aa	Predicted RBP	12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	GNRHR2	Q96P88	292 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	TIMP4	Q99727	224 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	UCK2	Q9BZX2	261 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	GSTO2	Q9H4Y5	243 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	CALHM2	Q9HA72	323 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	MYNN	Q9NPC7	610 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	NPDC1	Q9NQX5	325 aa	Predicted RBP	12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	TAS2R7	Q9NYW3	318 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	EXO1	Q9UQ84	846 aa	Known RBP	12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	CAMK2A	Q9UQM7	478 aa		12.87	□□□□□ -0.35
TPM1-223	ENST00000560445	SLC28A1	O00337	649 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	GNB5	O14775	395 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	ICOSLG	O75144	302 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	PROC	P04070	461 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	UROS	P10746	265 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	OPRM1	P35372	400 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	PNLIPRP2	P54317	469 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	NAGLU	P54802	743 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	MRPS35	P82673	323 aa	Known RBP	12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	HMGCS1	Q01581	520 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	C2orf80	Q0P641	193 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	ZNF155	Q12901	538 aa	Predicted RBP	12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	LTB4R	Q15722	352 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	FBXL19-AS1	Q494R0	122 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	CYP27C1	Q4G0S4	372 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	TRMT12	Q53H54	448 aa	Known RBP	12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	LIPM	Q5VYY2	423 aa		12.86	□□□□□ -0.35
TPM1-223	ENST00000560445	ARSK	Q6UWY0	536 aa		12.86	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms