RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SF3A2Q15428 464 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ESPNLQ6ZVH7 1005 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PRSS42Q7Z5A4 293 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SYT9Q86SS6 491 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MARCH9Q86YJ5 346 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GPR135Q8IZ08 494 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 STPG2Q8N412 459 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 NEIL3Q8TAT5 605 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SMAP2Q8WU79 429 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 BCL7CQ8WUZ0 217 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PLD4Q96BZ4 506 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 RNFT2Q96EX2 444 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ALG14Q96F25 216 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF649Q9BS31 505 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 FUZQ9BT04 418 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 C11orf49Q9H6J7 331 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MAN2C1Q9NTJ4 1040 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 IMP3Q9NV31 184 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 EXTL2Q9UBQ6 330 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 KCNE2Q9Y6J6 123 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ARID1BQ8NFD5 2236 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 TEX51A0A1B0GUA7 166 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 TCRBV16S1A1N1A0A5B0 115 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 AGAP14A8MT82 685 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 A8MVJ9 347 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SLC9A3R1O14745 358 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 HYAL3O43820 417 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MPZL2O60487 215 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PRMT3O60678 531 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PPM1BO75688 479 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SLC2A10O95528 541 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 RAB36O95755 333 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 HPXP02790 462 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PROS1P07225 676 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 FURINP09958 794 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ACRP10323 421 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ARAFP10398 606 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PDHA2P29803 388 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 NSG1P42857 185 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GIPRP48546 466 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CCT3P49368 545 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PPP3R1P63098 170 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PUDPQ08623 228 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 TPBGQ13641 420 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ST3GAL2Q16842 350 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 EOGTQ5NDL2 527 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 IDNKQ5T6J7 187 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MEDAGQ5VYS4 303 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MZT2BQ6NZ67 158 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CD200R1LQ6Q8B3 271 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MS4A15Q8N5U1 240 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 OR2AP1Q8NGE2 309 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ING5Q8WYH8 240 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ST8SIA2Q92186 375 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 KLK6Q92876 244 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GCDHQ92947 438 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 KIAA1143Q96AT1 154 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 OTULINQ96BN8 352 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 RBCK1Q9BYM8 510 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SLC6A16Q9GZN6 736 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 QRSL1Q9H0R6 528 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MED28Q9H204 178 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM38AQ9H6F2 299 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GPBP1L1Q9HC44 474 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MCCC2Q9HCC0 563 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 B4GALT6Q9UBX8 382 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF282Q9UDV7 671 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PPIEQ9UNP9 301 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 KCNMB2Q9Y691 235 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CFAP54Q96N23 3096 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SGK494L7N484 410 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 RTCAO00442 366 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SLC30A4O14863 429 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 FRS3O43559 492 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 LZTS3O60299 673 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ADAP00813 363 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 KLK1P06870 262 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CD3GP09693 182 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 RRASP10301 218 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 PRKACAP17612 351 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 HK1P19367 917 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TIA1P31483 386 aaKnown RBP eCLIP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TALDO1P37837 337 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 C21orf58P58505 322 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SRP54P61011 504 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 E2F1Q01094 437 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 LMAN2Q12907 356 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 RIN1Q13671 783 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 KCNC3Q14003 757 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 STK11Q15831 433 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GRK1Q15835 563 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 OCLNQ16625 522 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SLC36A2Q495M3 483 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 DCST1Q5T197 706 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 AGTRAPQ6RW13 159 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF782Q6ZMW2 699 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CFAP77Q6ZQR2 320 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CAMKMTQ7Z624 323 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GPAT4Q86UL3 456 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms