RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 ZNF740Q8NDX6 193 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TRPV3Q8NET8 790 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NLGN4YQ8NFZ3 816 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TRPC4APQ8TEL6 797 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TLCD1Q96CP7 247 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 REPS1Q96D71 796 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 WDR34Q96EX3 536 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NAF1Q96HR8 494 aaKnown RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 CMTM3Q96MX0 182 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF285Q96NJ3 590 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TXN2Q99757 166 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 C1QTNF3Q9BXJ4 246 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 SPNS1Q9H2V7 528 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF552Q9H707 407 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NT5DC2Q9H857 520 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 CRLF2Q9HC73 371 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 CUTCQ9NTM9 273 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NKIRAS1Q9NYS0 192 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 EXTL2Q9UBQ6 330 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ZFP69BQ9UJL9 534 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 PADI1Q9ULC6 663 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 RCE1Q9Y256 329 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 STK38LQ9Y2H1 464 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 KCNK7Q9Y2U2 307 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TMEM184BQ9Y519 407 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 CLDN16Q9Y5I7 305 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 SPEGQ15772 3267 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TEX51A0A1B0GUA7 166 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 MBD3L4A6NDZ8 208 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 MBD3L3A6NE82 208 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 MYO1GB0I1T2 1018 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 H3BMH7 237 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 M0QX08 132 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 OR7A17O14581 309 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 CTDSP2O14595 271 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 P2RX6O15547 441 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 RRP8O43159 456 aaKnown RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 PRAMEF4O60810 478 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 GAAP10253 952 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 LIPCP11150 499 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 PIM1P11309 404 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NEFHP12036 1026 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TSPAN8P19075 237 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 GSTM2P28161 218 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 SERPINB1P30740 379 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 BSGP35613 385 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 CCR10P46092 362 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ASMTP46597 345 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 CASP9P55211 416 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 STXBP1P61764 594 aaKnown RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 DCDP81605 110 aaKnown RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ABHD18Q0P651 414 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 LCP2Q13094 533 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 PRTGQ2VWP7 1150 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NRN1LQ496H8 165 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 HHATQ5VTY9 493 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 C1orf189Q5VU69 101 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 RHBDD2Q6NTF9 364 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ABHD13Q7L211 337 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 VN1R4Q7Z5H5 301 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NUDCD3Q8IVD9 361 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 DSELQ8IZU8 1212 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 FBXW8Q8N3Y1 598 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ANKRD53Q8N9V6 530 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 L3MBTL4Q8NA19 623 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 OR52B6Q8NGF0 335 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NT5CQ8TCD5 201 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 PROKR1Q8TCW9 393 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 DUSP19Q8WTR2 217 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 FAM216AQ8WUB2 273 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ZCCHC14Q8WYQ9 949 aaKnown RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 FAM168AQ92567 244 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 KIAA1143Q96AT1 154 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TM4SF19Q96DZ7 209 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ATP6V1G3Q96LB4 118 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 LRFN5Q96NI6 719 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 RBM14Q96PK6 669 aaKnown RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 MACROD1Q9BQ69 325 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 TUBB6Q9BUF5 446 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 MECRQ9BV79 373 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 NTMT1Q9BV86 223 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 LHX9Q9NQ69 397 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 SIRT3Q9NTG7 399 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 DHCR7Q9UBM7 475 aaKnown RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 IL19Q9UHD0 177 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF490Q9ULM2 529 aaPredicted RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 LIPT1Q9Y234 373 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 RUVBL1Q9Y265 456 aaKnown RBP4.8□□□□□ -1.64
CLIP1-217ENST00000543205 RNF11Q9Y3C5 154 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 X6R8D5 127 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 ANKRD12Q6UB98 2062 aa4.8□□□□□ -1.64
CLIP1-217ENST00000543205 A0A087WWL8 130 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 A0A1B0GX78 115 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TMEM120BA0PK00 339 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 WDR91A4D1P6 747 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GLOD5A6NK44 160 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 C9J4A7 227 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 H0YIV9 168 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms