RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 GABRA1P14867 456 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 ENDOUP21128 410 aaKnown RBP10.59□□□□□ -0.71
RTN3-209ENST00000538995 GDF1P27539 372 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 MASP1P48740 699 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 C2orf80Q0P641 193 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 GTF3C1Q12789 2109 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 KIAA0040Q15053 153 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 NNATQ16517 81 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 CLEC6AQ6EIG7 209 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 SLC30A6Q6NXT4 461 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 B3GNT6Q6ZMB0 384 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 PRR22Q8IZ63 422 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 LIX1Q8N485 282 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 SIMC1Q8NDZ2 872 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 CDC26Q8NHZ8 85 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 CA5BP1Q8WTZ4 195 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 DTNBP1Q96EV8 351 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 SLC35A4Q96G79 324 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 FCRL1Q96LA6 429 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 JSRP1Q96MG2 331 aaPredicted RBP10.59□□□□□ -0.71
RTN3-209ENST00000538995 FAM111AQ96PZ2 611 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 OSBPL11Q9BXB4 747 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 EXO5Q9H790 373 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 METTL7AQ9H8H3 244 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 LRTM1Q9HBL6 345 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 EML4Q9HC35 981 aaKnown RBP10.59□□□□□ -0.71
RTN3-209ENST00000538995 PNPLA3Q9NST1 481 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 TAS2R9Q9NYW1 312 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 SPRR3Q9UBC9 169 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 ACAD8Q9UKU7 415 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 TMED5Q9Y3A6 229 aa10.59□□□□□ -0.71
RTN3-209ENST00000538995 POLR3HQ9Y535 204 aaPredicted RBP10.59□□□□□ -0.71
RTN3-209ENST00000538995 LRBAP50851 2863 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 PRAMEF25A6NGN4 478 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 PLOD2O00469 737 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 SNPHO15079 494 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 TBX19O60806 448 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 SEC22BO75396 215 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 ERN1O75460 977 aaKnown RBP10.58□□□□□ -0.72
RTN3-209ENST00000538995 HPNP05981 417 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 TUBBP07437 444 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 CT45A8P0DMV1 189 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 CT45A9P0DMV2 189 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 ALDH3A1P30838 453 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 CDK9P50750 372 aaKnown RBP10.58□□□□□ -0.72
RTN3-209ENST00000538995 NCBP2P52298 156 aaKnown RBP eCLIP10.58□□□□□ -0.72
RTN3-209ENST00000538995 MRPS22P82650 360 aaKnown RBP10.58□□□□□ -0.72
RTN3-209ENST00000538995 EFR3AQ14156 821 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 CDSNQ15517 529 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 CT45A2Q5DJT8 189 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 FNDC7Q5VTL7 733 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 BICRALQ6AI39 1079 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 TIGD3Q6B0B8 471 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 ZNF585AQ6P3V2 769 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 ACBD4Q8NC06 268 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 OR7G2Q8NG99 324 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 OR5M9Q8NGP3 310 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 TCP10LQ8TDR4 215 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 KAT2AQ92830 837 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 TMCO6Q96DC7 493 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 COL21A1Q96P44 957 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 SPOCK3Q9BQ16 436 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 SLC6A15Q9H2J7 730 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 FOLH1BQ9HBA9 442 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 SLC17A7Q9P2U7 560 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 FAM215AQ9Y5M1 114 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 DNAJC15Q9Y5T4 150 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 DNAJC13O75165 2243 aa10.58□□□□□ -0.72
RTN3-209ENST00000538995 APCP25054 2843 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 LSM1O15116 133 aaKnown RBP10.57□□□□□ -0.72
RTN3-209ENST00000538995 TYROBPO43914 113 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 UGT2B11O75310 529 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 PSMG1O95456 288 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 DDX5P17844 614 aaKnown RBP10.57□□□□□ -0.72
RTN3-209ENST00000538995 PTPN6P29350 595 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 KRT20P35900 424 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 MC3RP41968 323 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 NUP107P57740 925 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 PMPCAQ10713 525 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 ZNF155Q12901 538 aaPredicted RBP10.57□□□□□ -0.72
RTN3-209ENST00000538995 ARL13AQ5H913 290 aaPredicted RBP10.57□□□□□ -0.72
RTN3-209ENST00000538995 NHSL2Q5HYW2 709 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 C1orf185Q5T7R7 199 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 NPSR1Q6W5P4 371 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 Q6ZSR9 355 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 GDF7Q7Z4P5 450 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 MCEMP1Q8IX19 187 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 PM20D2Q8IYS1 436 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 CLYBLQ8N0X4 340 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 OR2L13Q8N349 312 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 RPRMLQ8N4K4 120 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 OR1J4Q8NGS1 313 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 OR2T11Q8NH01 316 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 LILRB4Q8NHJ6 448 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 RNF138Q8WVD3 245 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 TWIST2Q8WVJ9 160 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 TMBIM1Q969X1 311 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 AMDHD1Q96NU7 426 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 NODALQ96S42 347 aa10.57□□□□□ -0.72
RTN3-209ENST00000538995 TREX2Q9BQ50 279 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms