RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 RNF113BQ8IZP6 322 aaKnown RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 OR6V1Q8N148 313 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 KRTCAP2Q8N6L1 136 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 OR1M1Q8NGA1 313 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 OR4D10Q8NGI6 311 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SPPL2AQ8TCT8 520 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 EEF1AKMT1Q8WVE0 214 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 TM9SF4Q92544 642 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 INTS12Q96CB8 462 aaKnown RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 FUBP3Q96I24 572 aaKnown RBP eCLIP6.33□□□□□ -1.4
USP28-207ENST00000538475 FCRL2Q96LA5 508 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 SEPT5Q99719 369 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 SMOQ99835 787 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 INPP5KQ9BT40 448 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 THAP7Q9BT49 309 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 IFT27Q9BW83 186 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 ZYG11BQ9C0D3 744 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 TMEM39BQ9GZU3 492 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 HDHD2Q9H0R4 259 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 ABCG5Q9H222 651 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 P2RY12Q9H244 342 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 MROH8Q9H579 483 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SLC32A1Q9H598 525 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 SLC6A13Q9NSD5 602 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 COA4Q9NYJ1 87 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 REV1Q9UBZ9 1251 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 EVLQ9UI08 416 aaPredicted RBP6.33□□□□□ -1.4
USP28-207ENST00000538475 FBXL3Q9UKT7 428 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 FZD1Q9UP38 647 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 FAM50BQ9Y247 325 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 GINS2Q9Y248 185 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 BRWD3Q6RI45 1802 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 DOCK6Q96HP0 2047 aa6.33□□□□□ -1.4
USP28-207ENST00000538475 NUP210Q8TEM1 1887 aaPredicted RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 MYO10Q9HD67 2058 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 TRAV19A0A0A6YYK7 116 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 LOC102723532A0A0G2JNH3 316 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SMIM28A0A1B0GU29 152 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 A0A1B0GUH1 482 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 PLSCR5A0PG75 271 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 C1orf226A1L170 272 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SNRPGP15A8MWD9 76 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 A8MX80 341 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 DNASE2O00115 360 aaPredicted RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 RNASET2O00584 256 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 SCAMP3O14828 347 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 PPEF2O14830 753 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 PRAMEF11O60813 436 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 NBNO60934 754 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 STK16O75716 305 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 BEST1O76090 585 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 OR2A4O95047 310 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 DIRAS1O95057 198 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 ARIH2O95376 493 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SLC25A27O95847 323 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 IL5P05113 134 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 FHP07954 510 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 NMBP08949 121 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 ACP2P11117 423 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 INSRRP14616 1297 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 PPP3CBP16298 524 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 ZNF16P17020 682 aaPredicted RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 ZNF7P17097 686 aaPredicted RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 SDC1P18827 310 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 ITGALP20701 1170 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 GSTM3P21266 225 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 GKP32189 559 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SOX3P41225 446 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 STAT5AP42229 794 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 HNMTP50135 292 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 MMP15P51511 669 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 CDH12P55289 794 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 WNT3P56703 355 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 PLIN5Q00G26 463 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 DSC2Q02487 901 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 CACNG1Q06432 222 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 MRPL58Q14197 206 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 RGNQ15493 299 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 LTB4RQ15722 352 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 GPR162Q16538 588 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 GSG1Q2KHT4 349 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 LIPKQ5VXJ0 399 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 HBMQ6B0K9 141 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 C22orf42Q6IC83 251 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 TRIM40Q6P9F5 258 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 LBX2Q6XYB7 198 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 ZNF621Q6ZSS3 439 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 MOB2Q70IA6 237 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SMIM5Q71RC9 77 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 REC114Q7Z4M0 266 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 TSEN54Q7Z6J9 526 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 ABI3BPQ7Z7G0 1075 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 MRGPREQ86SM8 312 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 RNF180Q86T96 592 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SKA3Q8IX90 412 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 OXR1Q8N573 874 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 TEX19Q8NA77 164 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 FAM98AQ8NCA5 519 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 OR11H4Q8NGC9 324 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 OR8K3Q8NH51 312 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms