RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ARHGAP11AQ6P4F7 1023 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 RGS9BPQ6ZS82 235 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 ZNF551Q7Z340 670 aaPredicted RBP9.75□□□□□ -0.85
CD44-227ENST00000528086 WDR53Q7Z5U6 358 aaPredicted RBP9.75□□□□□ -0.85
CD44-227ENST00000528086 SLC22A16Q86VW1 577 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 WDSUB1Q8N9V3 476 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 OR5M9Q8NGP3 310 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 CLHC1Q8NHS4 586 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 FAM76AQ8TAV0 307 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 DIO2Q92813 273 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 GFM2Q969S9 779 aaKnown RBP9.75□□□□□ -0.85
CD44-227ENST00000528086 TMBIM1Q969X1 311 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 CIDECQ96AQ7 238 aaPredicted RBP9.75□□□□□ -0.85
CD44-227ENST00000528086 PKNOX2Q96KN3 472 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 RILPQ96NA2 401 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 AMDHD1Q96NU7 426 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 GNRHR2Q96P88 292 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 ZIM3Q96PE6 472 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 TRMOQ9BU70 441 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 FOLH1BQ9HBA9 442 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 LRTM1Q9HBL6 345 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 FLRT3Q9NZU0 649 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 ENTPD4Q9Y227 616 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 FIS1Q9Y3D6 152 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 TRAF6Q9Y4K3 522 aa9.75□□□□□ -0.85
CD44-227ENST00000528086 MED12LQ86YW9 2145 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 FRG2CA6NGY1 282 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 PRSS44E7EML9 344 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 H3BQF6 201 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 AQP7O14520 342 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 PIP5K1BO14986 540 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 SUSD5O60279 629 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 SEC22BO75396 215 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 TOXO94900 526 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 IGKV1D-16P01601 117 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 BCKDHAP12694 445 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 AGAP20933 346 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 HTR1EP28566 365 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 PTPN6P29350 595 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 ADH7P40394 386 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 MC3RP41968 323 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 FRKP42685 505 aaPredicted RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 SERPINB4P48594 390 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 TRPC1P48995 793 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 SLC10A1Q14973 349 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 HEPACAMQ14CZ8 416 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 TMEM81Q6P7N7 255 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 XKRXQ6PP77 449 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 RPTNQ6XPR3 784 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 CCDC71Q8IV32 467 aaPredicted RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 LIX1LQ8IVB5 337 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 DND1Q8IYX4 353 aaKnown RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 ZNF295-AS1Q8N0V1 137 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 TAGAPQ8N103 731 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 CDC26Q8NHZ8 85 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 TWIST2Q8WVJ9 160 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 HOXB13Q92826 284 aaPredicted RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 ELP4Q96EB1 424 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 HSPBAP1Q96EW2 488 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 METTL2AQ96IZ6 378 aaKnown RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 TSSK3Q96PN8 268 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 SMC6Q96SB8 1091 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 SECISBP2Q96T21 854 aaKnown RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 DOHHQ9BU89 302 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 ACKR4Q9NPB9 350 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 NPDC1Q9NQX5 325 aaPredicted RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 C1orf109Q9NX04 203 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 PSME2Q9UL46 239 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 C19orf53Q9UNZ5 99 aaPredicted RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 KLF2Q9Y5W3 355 aaPredicted RBP9.74□□□□□ -0.85
CD44-227ENST00000528086 ZNF780BQ9Y6R6 833 aa9.74□□□□□ -0.85
CD44-227ENST00000528086 POLQO75417 2590 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 SLC28A1O00337 649 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 PLOD2O00469 737 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 PRRG2O14669 202 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 HCN1O60741 890 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 ICOSLGO75144 302 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 HPNP05981 417 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 GLI4P10075 376 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 NAGAP17050 411 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 EFNA1P20827 205 aaPredicted RBP9.73□□□□□ -0.85
CD44-227ENST00000528086 GSTM5P46439 218 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 CDK9P50750 372 aaKnown RBP9.73□□□□□ -0.85
CD44-227ENST00000528086 WNT3P56703 355 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 KCNJ2P63252 427 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 CRYZQ08257 329 aaKnown RBP9.73□□□□□ -0.85
CD44-227ENST00000528086 IFFO1Q0D2I5 559 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 IMPG1Q17R60 797 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 KRT71Q3SY84 523 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 EIPR1Q53HC9 387 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 HLA-DQA1Q5Y7H0 255 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 TIGD3Q6B0B8 471 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 POMZP3Q6PJE2 187 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 TMEM107Q6UX40 140 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 SLC34A3Q8N130 599 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 OR2L13Q8N349 312 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 NEIL3Q8TAT5 605 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 AGR3Q8TD06 166 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 ERP27Q96DN0 273 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms