RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 EPHB3P54753 998 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 DYNLL1P63167 89 aaKnown RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 CXADRP78310 365 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 SEMG2Q02383 582 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 TNFRSF9Q07011 255 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 NPRL3Q12980 569 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 HNRNPA0Q13151 305 aaKnown RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 DYRK1AQ13627 763 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 IL18Q14116 193 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ARHGEF7Q14155 803 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 RBMS2Q15434 407 aaKnown RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 TSNQ15631 228 aaKnown RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 SSX1Q16384 188 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 FAM83EQ2M2I3 478 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 EXOC3L2Q2M3D2 409 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 SEZ6Q53EL9 994 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 PCID2Q5JVF3 399 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 TSTD2Q5T7W7 516 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 CPZQ66K79 652 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 CYB5R2Q6BCY4 276 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 TMEM88Q6PEY1 159 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 CNIH2Q6PI25 160 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ALKAL2Q6UX46 152 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 CASP12Q6UXS9 341 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 GSG1LQ6UXU4 331 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ZNF574Q6ZN55 896 aaPredicted RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 PDZD4Q76G19 769 aaPredicted RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 TMEM179BQ7Z7N9 219 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ADGRA1Q86SQ6 560 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 MON1AQ86VX9 555 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 CYP4Z1Q86W10 505 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 KRTAP19-1Q8IUB9 90 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 SLITRK4Q8IW52 837 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 HS3ST5Q8IZT8 346 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 SPICQ8N5J4 248 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 DNAJC5GQ8N7S2 189 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 FAM169BQ8N8A8 192 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 OR5T3Q8NGG3 340 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 OR52N2Q8NGI0 321 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 STOML3Q8TAV4 291 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 XAGE5Q8WWM1 108 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 BRI3BPQ8WY22 251 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 FAM162AQ96A26 154 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 TADA1Q96BN2 335 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ZNF669Q96BR6 464 aaPredicted RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 MISP3Q96FF7 219 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 NOL4LQ96MY1 436 aaPredicted RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 CASD1Q96PB1 797 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ELF4Q99607 663 aaPredicted RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 MESP1Q9BRJ9 268 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 TEX12Q9BXU0 123 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 NLNQ9BYT8 704 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 SPRTNQ9H040 489 aaPredicted RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 RHOJQ9H4E5 214 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ZNF576Q9H609 170 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ZFYVE1Q9HBF4 777 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 SLC6A20Q9NP91 592 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 TMEM138Q9NPI0 162 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 SMCO4Q9NRQ5 59 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 MED17Q9NVC6 651 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 NDUFB11Q9NX14 153 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 ZIM2Q9NZV7 527 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 KLHL9Q9P2J3 617 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 PLEKHB1Q9UF11 243 aaPredicted RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 IKZF3Q9UKT9 509 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 MRPS23Q9Y3D9 190 aaKnown RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 RNF114Q9Y508 228 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 LOXHD1Q8IVV2 1947 aa5.5□□□□□ -1.53
CD44-225ENST00000527326 GOLGB1Q14789 3259 aaKnown RBP5.5□□□□□ -1.53
CD44-225ENST00000527326 OTOFQ9HC10 1997 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 FOCADQ5VW36 1801 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 A0A096LPI6 279 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 LOC285095A0A1B0GVY8 99 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 TMEM72A0PK05 275 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 CCDC85CA6NKD9 419 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 COLCA2A8K830 154 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 G3V3Q6 166 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 SMIM22K7EJ46 135 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 GPR31O00270 319 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 FFAR3O14843 346 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 SMAD7O15105 426 aaKnown RBP5.49□□□□□ -1.53
CD44-225ENST00000527326 GPR42O15529 346 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 HSPA12AO43301 675 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 PPIHO43447 177 aaKnown RBP5.49□□□□□ -1.53
CD44-225ENST00000527326 SUSD5O60279 629 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 MPZL2O60487 215 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 DPM1O60762 260 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 KERAO60938 352 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 ICOSLGO75144 302 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 KHDRBS3O75525 346 aaKnown RBP5.49□□□□□ -1.53
CD44-225ENST00000527326 RGS11O94810 467 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 CDRT1O95170 752 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 SIX6O95475 246 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 METTL18O95568 372 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 F2P00734 622 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 EGFP01133 1207 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 ALDOBP05062 364 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 CD2P06729 351 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 ADRB2P07550 413 aa5.49□□□□□ -1.53
CD44-225ENST00000527326 SPARCP09486 303 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms