RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 CCT8L1PA6NM43 557 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 UNC5CO95185 931 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 F10P00742 488 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 IFI6P09912 130 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 ZCCHC18P0CG32 403 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 MATN1P21941 496 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 PRIM2P49643 509 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 MTPNP58546 118 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 MYBPC3Q14896 1274 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 KRT72Q14CN4 511 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 ST3GAL2Q16842 350 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.7□□□□□ -0.38
CD44-224ENST00000526669 BORAQ6PGQ7 559 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 LINC00696Q6ZRV3 163 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 RPS19BP1Q86WX3 136 aaKnown RBP12.7□□□□□ -0.38
CD44-224ENST00000526669 SLC44A2Q8IWA5 706 aaPredicted RBP12.7□□□□□ -0.38
CD44-224ENST00000526669 PCYOX1LQ8NBM8 494 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 FDCSPQ8NFU4 85 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 FBXO27Q8NI29 283 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 ADIPOR1Q96A54 375 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 NEURL3Q96EH8 262 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 VSTM2LQ96N03 204 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 OR7D2Q96RA2 312 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 LMF1Q96S06 567 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 CPPED1Q9BRF8 314 aaPredicted RBP12.7□□□□□ -0.38
CD44-224ENST00000526669 ACTRT3Q9BYD9 372 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 OR51I1Q9H343 314 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 TPT1P8Q9HAU6 139 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.7□□□□□ -0.38
CD44-224ENST00000526669 FAF1Q9UNN5 650 aaPredicted RBP12.7□□□□□ -0.38
CD44-224ENST00000526669 CFL2Q9Y281 166 aa12.7□□□□□ -0.38
CD44-224ENST00000526669 TRBV5-3A0A0A0MS03 114 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 FXYD1O00168 92 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 CLIC1O00299 241 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 ZNF354AO60765 605 aaPredicted RBP12.69□□□□□ -0.38
CD44-224ENST00000526669 OR12D1P0DN82 309 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 ESRRAP11474 423 aaPredicted RBP12.69□□□□□ -0.38
CD44-224ENST00000526669 GABRA3P34903 492 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 MLF1P58340 268 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 AP2B1P63010 937 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 MXRA7P84157 204 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 ART3Q13508 389 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 ZNHIT3Q15649 155 aaPredicted RBP12.69□□□□□ -0.38
CD44-224ENST00000526669 DUSP5Q16690 384 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 COL28A1Q2UY09 1125 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 RUNDC3AQ59EK9 446 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 COQ5Q5HYK3 327 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 JMJD6Q6NYC1 403 aaPredicted RBP12.69□□□□□ -0.38
CD44-224ENST00000526669 CDC73Q6P1J9 531 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 GALNT10Q86SR1 603 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 APLFQ8IW19 511 aaPredicted RBP12.69□□□□□ -0.38
CD44-224ENST00000526669 HORMAD2Q8N7B1 307 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 ZNF441Q8N8Z8 693 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 SLC16A11Q8NCK7 471 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 OR4N2Q8NGD1 307 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 OR5L2Q8NGL0 311 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 OR8K3Q8NH51 312 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 NUBPLQ8TB37 319 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 APOBEC4Q8WW27 367 aaKnown RBP12.69□□□□□ -0.38
CD44-224ENST00000526669 PIK3R3Q92569 461 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 CDS1Q92903 461 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 RAB8BQ92930 207 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 LRRC58Q96CX6 371 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 NSL1Q96IY1 281 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 LCORQ96JN0 433 aaPredicted RBP12.69□□□□□ -0.38
CD44-224ENST00000526669 PHF12Q96QT6 1004 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 IKZF5Q9H5V7 419 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 EFCAB1Q9HAE3 211 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 GID8Q9NWU2 228 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 KCNE3Q9Y6H6 103 aa12.69□□□□□ -0.38
CD44-224ENST00000526669 SVILO95425 2214 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 ITGA10O75578 1167 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 OR2J2O76002 312 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 NADKO95544 446 aaPredicted RBP12.68□□□□□ -0.38
CD44-224ENST00000526669 KRT75O95678 551 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 ALOX5P09917 674 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 CT45A8P0DMV1 189 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 CT45A9P0DMV2 189 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 ETFAP13804 333 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 SOX11P35716 441 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 CRATP43155 626 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 PPICP45877 212 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 RFX3P48380 749 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 KHKP50053 298 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 PSG6Q00889 435 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 MEP1AQ16819 746 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 CT45A2Q5DJT8 189 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 H3F3CQ6NXT2 135 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 BHLHB9Q6PI77 547 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 OLIG3Q7RTU3 272 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 BEST3Q8N1M1 668 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 C10orf111Q8N326 155 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 SLC5A8Q8N695 610 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 COX18Q8N8Q8 333 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 CDRT4Q8N9R6 151 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 GPR151Q8TDV0 419 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 ADAMTS15Q8TE58 950 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 RMND5BQ96G75 393 aaPredicted RBP12.68□□□□□ -0.38
CD44-224ENST00000526669 SLC35A4Q96G79 324 aa12.68□□□□□ -0.38
CD44-224ENST00000526669 ZNF354BQ96LW1 612 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms