RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 C9orf40Q8IXQ3 194 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 NUP43Q8NFH3 380 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 DNAJB8Q8NHS0 232 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 C9orf43Q8TAL5 461 aaPredicted RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 PNPT1Q8TCS8 783 aaKnown RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 THAP3Q8WTV1 239 aaPredicted RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 HOXB13Q92826 284 aaPredicted RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 MS4A4EQ96PG1 132 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 OR10A5Q9H207 317 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 ADNPQ9H2P0 1102 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 ZNF552Q9H707 407 aaPredicted RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 TPT1P8Q9HAU6 139 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 ZNF71Q9NQZ8 489 aaPredicted RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 TP53TG5Q9Y2B4 290 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 PCDHGA9Q9Y5G4 932 aaKnown RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 B2RBV5 119 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 K7EM74 188 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 ZFAND5O76080 213 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 NPPAP01160 153 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 PDGFAP04085 211 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 HMGN2P05204 90 aaKnown RBP14.19□□□□□ -0.14
LSM1-203ENST00000520755 MAP3K8P41279 467 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 CASP9P55211 416 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 NCALDP61601 193 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 PRR5P85299 388 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 LASP1Q14847 261 aaKnown RBP14.19□□□□□ -0.14
LSM1-203ENST00000520755 SPDYE7PQ495Y7 208 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 RABL3Q5HYI8 236 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 CRB2Q5IJ48 1285 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 COX20Q5RI15 118 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 NANOGP8Q6NSW7 305 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 PCSK4Q6UW60 755 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 ISLR2Q6UXK2 745 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 C6orf120Q7Z4R8 191 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 WDR53Q7Z5U6 358 aaPredicted RBP14.19□□□□□ -0.14
LSM1-203ENST00000520755 SLC5A8Q8N695 610 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 TRIML2Q8N7C3 387 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 OR7G1Q8NGA0 311 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 OR56A1Q8NGH5 318 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 C16orf52Q8NHV5 167 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 FBXO30Q8TB52 745 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 TMEM125Q96AQ2 219 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 MOAP1Q96BY2 351 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 OTUB1Q96FW1 271 aaPredicted RBP14.19□□□□□ -0.14
LSM1-203ENST00000520755 C16orf58Q96GQ5 468 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 SLC35G5Q96KT7 338 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 VSTM2LQ96N03 204 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 UBL7Q96S82 380 aaPredicted RBP14.19□□□□□ -0.14
LSM1-203ENST00000520755 ITPAQ9BY32 194 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 NANOGQ9H9S0 305 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 FOLH1BQ9HBA9 442 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 C3orf14Q9HBI5 128 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 EQTNQ9NQ60 294 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.19□□□□□ -0.14
LSM1-203ENST00000520755 TAS2R1Q9NYW7 299 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.19□□□□□ -0.14
LSM1-203ENST00000520755 BCAP29Q9UHQ4 241 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 TEKT2Q9UIF3 430 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 TUBD1Q9UJT1 453 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 HEMK1Q9Y5R4 338 aaPredicted RBP14.19□□□□□ -0.14
LSM1-203ENST00000520755 EML6Q6ZMW3 1958 aa14.19□□□□□ -0.14
LSM1-203ENST00000520755 CLIC1O00299 241 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 MAN1A2O60476 641 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 PRAMEF2O60811 474 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 COQ9O75208 318 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 ACP2P11117 423 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 SOX11P35716 441 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 CHI3L1P36222 383 aaPredicted RBP14.18□□□□□ -0.14
LSM1-203ENST00000520755 MAN2A2P49641 1150 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 PRKAG1P54619 331 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 PSME3P61289 254 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 RNF4P78317 190 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 ART3Q13508 389 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 EBPQ15125 230 aaKnown RBP14.18□□□□□ -0.14
LSM1-203ENST00000520755 LACTB2Q53H82 288 aaPredicted RBP14.18□□□□□ -0.14
LSM1-203ENST00000520755 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.18□□□□□ -0.14
LSM1-203ENST00000520755 ABHD17BQ5VST6 288 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 H3F3CQ6NXT2 135 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 NPSR1Q6W5P4 371 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 RNF130Q86XS8 419 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 PGAM4Q8N0Y7 254 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 ZNF354BQ96LW1 612 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 GAL3ST4Q96RP7 486 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 SMAD5Q99717 465 aaKnown RBP14.18□□□□□ -0.14
LSM1-203ENST00000520755 CDCP1Q9H5V8 836 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 LIN28AQ9H9Z2 209 aaKnown RBP14.18□□□□□ -0.14
LSM1-203ENST00000520755 ZBTB20Q9HC78 741 aaPredicted RBP14.18□□□□□ -0.14
LSM1-203ENST00000520755 GID8Q9NWU2 228 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 CMTM6Q9NX76 183 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 GMPR2Q9P2T1 348 aaKnown RBP14.18□□□□□ -0.14
LSM1-203ENST00000520755 ABCD2Q9UBJ2 740 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 ZNF451Q9Y4E5 1061 aa14.18□□□□□ -0.14
LSM1-203ENST00000520755 CACNA1GO43497 2377 aa14.17□□□□□ -0.14
LSM1-203ENST00000520755 TMEM200CA6NKL6 621 aa14.17□□□□□ -0.14
LSM1-203ENST00000520755 NME4O00746 187 aa14.17□□□□□ -0.14
LSM1-203ENST00000520755 F10P00742 488 aa14.17□□□□□ -0.14
LSM1-203ENST00000520755 KRT16P08779 473 aa14.17□□□□□ -0.14
LSM1-203ENST00000520755 ST13P50502 369 aaKnown RBP14.17□□□□□ -0.14
LSM1-203ENST00000520755 SLC7A2P52569 658 aa14.17□□□□□ -0.14
LSM1-203ENST00000520755 PSG6Q00889 435 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms