RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TSEN54Q7Z6J9 526 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 PTOV1Q86YD1 416 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 PLA2G15Q8NCC3 412 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 C20orf85Q9H1P6 137 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 XKR8Q9H6D3 395 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 WDR26Q9H7D7 661 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 SEBOXQ9HB31 216 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 TREM2Q9NZC2 230 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 CA5BQ9Y2D0 317 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 TMEM218A2RU14 115 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 FPGTO14772 594 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 ZNF865P0CJ78 1059 aaPredicted RBP11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 ODC1P11926 461 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 GDF5P43026 501 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 RPS14P62263 151 aaKnown RBP11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 DGCR2P98153 550 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 DEFB115Q30KQ5 88 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 ATP13A5Q4VNC0 1218 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 MEDAGQ5VYS4 303 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 DHRS7BQ6IAN0 325 aaPredicted RBP11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC29A4Q7RTT9 530 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 LHFPL3Q86UP9 236 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 RGL4Q8IZJ4 473 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 MRPL38Q96DV4 380 aaKnown RBP11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 MAPKAP1Q9BPZ7 522 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 POLDIP3Q9BY77 421 aaKnown RBP11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 DZANK1Q9NVP4 752 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 DLGAP4Q9Y2H0 992 aa11.4□□□□□ -0.59
LIMCH1-213ENST00000511496 LOC390937A0A1W2PQ73 354 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 CXorf65A6NEN9 183 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 URADA6NGE7 173 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 ZAR1LA6NP61 321 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 WNT1P04628 370 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 EBLN1P0CF75 366 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 WARSP23381 471 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 TACR1P25103 407 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 CALCRP30988 508 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 PXNP49023 591 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 CCL23P55773 120 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 WNT4P56705 351 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 BPIFB3P59826 476 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 USF2Q15853 346 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 MRNIPQ6NTE8 343 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 GOLGA7Q7Z5G4 137 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC9B2Q86UD5 537 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 KLBQ86Z14 1044 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 NAXDQ8IW45 347 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 SLITRK4Q8IW52 837 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 IQCF1Q8N6M8 205 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 OR13C4Q8NGS5 318 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 TCTEX1D2Q8WW35 142 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC6A18Q96N87 628 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 NPY6RQ99463 290 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 DOHHQ9BU89 302 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 MFSD1Q9H3U5 465 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 PIAS3Q9Y6X2 628 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 UBE2CO00762 179 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 PPEF2O14830 753 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 ARPC1BO15143 372 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 ULK1O75385 1050 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 CD86P42081 329 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 RAD52P43351 418 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 LAMTOR4Q0VGL1 99 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 TMEM132DQ14C87 1099 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 TMEM132BQ14DG7 1078 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 TTLL9Q3SXZ7 439 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 LRIF1Q5T3J3 769 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 GPRC6AQ5T6X5 926 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 CXorf57Q6NSI4 855 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 HHIPL2Q6UWX4 724 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 RHOUQ7L0Q8 258 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 PRSS45Q7RTY3 260 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 FAM122BQ7Z309 247 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 SERPINA11Q86U17 422 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 CCDC117Q8IWD4 279 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 TMIEQ8NEW7 156 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 DMBX1Q8NFW5 382 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 OR52I1Q8NGK6 324 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 FATE1Q969F0 183 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 CMTM3Q96MX0 182 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 BBS4Q96RK4 519 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 FDXACB1Q9BRP7 624 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 AARSD1Q9BTE6 412 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 GGACTQ9BVM4 153 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 DERL2Q9GZP9 239 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 ALX4Q9H161 411 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 CPA4Q9UI42 421 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 PLEKHA6Q9Y2H5 1048 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 AP1M2Q9Y6Q5 423 aa11.39□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC9B1P1A6NJY1 282 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 BRINP1O60477 761 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 ZNF14P17017 642 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 NPR2P20594 1047 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TRHRP34981 398 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TSPAN7P41732 249 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC11A2P49281 568 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 GTF2H2Q13888 395 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 UBXN2BQ14CS0 331 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 ZRANB3Q5FWF4 1079 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 GTF2H2CQ6P1K8 395 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms