RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 EFCAB11Q9BUY7 163 aa8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 KLHL31Q9H511 634 aa8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 CPNE5Q9HCH3 593 aa8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 FAM60AQ9NP50 221 aa8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 RDH8Q9NYR8 311 aa8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 CRNNQ9UBG3 495 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 VPS29Q9UBQ0 182 aa8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 B3GNT3Q9Y2A9 372 aa8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 DLGAP4Q9Y2H0 992 aa8.19□□□□□ -1.1
LIMCH1-209ENST00000509277 CACNA1GO43497 2377 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 A0A1B0GVC2 190 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 OR2W5A6NFC9 320 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 A6NIN4 97 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 ZNF701M0R085 212 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 HCRTR1O43613 425 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 DUX1O43812 170 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 KLK8O60259 260 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 C8orf89P0DMQ9 161 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 IL7P13232 177 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 EPHA2P29317 976 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 MC1RQ01726 317 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 DPY19L1Q2PZI1 675 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 TOR2AQ5JU69 321 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 SHISA6Q6ZSJ9 500 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 Q6ZSR9 355 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 MMP21Q8N119 569 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 ZBTB44Q8NCP5 570 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 SLC22A18Q96BI1 424 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 DIRAS2Q96HU8 199 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 CNDP2Q96KP4 475 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 ZBTB18Q99592 522 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 DHRS9Q9BPW9 319 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 A0A0X1KG70 313 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 A0A1W2PPV9 198 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 OR5K3A6NET4 321 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 CTSVO60911 334 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 APOL3O95236 402 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 ALDOCP09972 364 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 TDGF1P13385 188 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 GSTM2P28161 218 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 PRIM2P49643 509 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 ALDH3A2P51648 485 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 CCL7P80098 99 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 HYAL2Q12891 473 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 SNTA1Q13424 505 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 DSG2Q14126 1118 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 QPRTQ15274 297 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 NR0B2Q15466 257 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 GPR19Q15760 415 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 ZNF658BQ4V348 819 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 Q5BKY6 102 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 SLC16A12Q6ZSM3 486 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 MARCH9Q86YJ5 346 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 TMEM126BQ8IUX1 230 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 MFSD4AQ8N468 514 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 ZNF655Q8N720 491 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 YIPF7Q8N8F6 280 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 ANKRD53Q8N9V6 530 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 CEP76Q8TAP6 659 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 IFI44Q8TCB0 444 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 SCARF2Q96GP6 870 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 TEX37Q96LM6 180 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 DPCDQ9BVM2 203 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 MIEF1Q9NQG6 463 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 SEMA4GQ9NTN9 838 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 C1orf109Q9NX04 203 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 IMPAD1Q9NX62 359 aa8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 CNOT11Q9UKZ1 510 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-209ENST00000509277 IGHV5-51A0A0C4DH38 117 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 FAM240BA0A1B0GVZ2 78 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 PRR33A8MZF0 331 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SIGLEC5O15389 551 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 PCDH7O60245 1069 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 KDM4BO94953 1096 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 NTRK1P04629 796 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SLC35G6P0C7Q6 338 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 RD3LP0DJH9 198 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SOAT1P35610 550 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 FOXL2P58012 376 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 RAB14P61106 215 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SHBQ15464 509 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 BHLHB9Q6PI77 547 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 ASB18Q6ZVZ8 466 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 OR4N5Q8IXE1 308 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 CPSF7Q8N684 471 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 ESX1Q8N693 406 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 BOLLQ8N9W6 283 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 UXS1Q8NBZ7 420 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 USP7Q93009 1102 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 EXOSC8Q96B26 276 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 REPS1Q96D71 796 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SLC47A1Q96FL8 570 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 REXO5Q96IC2 774 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 OR2A14Q96R47 310 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SGPP1Q9BX95 441 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 GPN2Q9H9Y4 310 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 DHCR7Q9UBM7 475 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SNX7Q9UNH6 387 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 A6NCN8 305 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 AGAP5A6NIR3 686 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms