RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TREX2Q9BQ50 279 aaPredicted RBP13.26□□□□□ -0.29
CUX1-209ENST00000487284 OSBPL10Q9BXB5 764 aa13.26□□□□□ -0.29
CUX1-209ENST00000487284 GABARAPL1Q9H0R8 117 aa13.26□□□□□ -0.29
CUX1-209ENST00000487284 ANKRA2Q9H9E1 313 aa13.26□□□□□ -0.29
CUX1-209ENST00000487284 FBXO8Q9NRD0 319 aa13.26□□□□□ -0.29
CUX1-209ENST00000487284 SMPD3Q9NY59 655 aaPredicted RBP13.26□□□□□ -0.29
CUX1-209ENST00000487284 IFT80Q9P2H3 777 aaPredicted RBP13.26□□□□□ -0.29
CUX1-209ENST00000487284 C19orf53Q9UNZ5 99 aaPredicted RBP13.26□□□□□ -0.29
CUX1-209ENST00000487284 TMEM184BQ9Y519 407 aaPredicted RBP13.26□□□□□ -0.29
CUX1-209ENST00000487284 GPC6Q9Y625 555 aaPredicted RBP13.26□□□□□ -0.29
CUX1-209ENST00000487284 CCDC187A0A096LP49 1063 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 PLOD3O60568 738 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 E2F6O75461 281 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 ATXN8OSP0DMR3 200 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 NR2F1P10589 423 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 ALAS2P22557 587 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 AVPR1BP47901 424 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 MAPK10P53779 464 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 CRISP3P54108 245 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 IGLV3-21P80748 117 aaPredicted RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 TARDBPQ13148 414 aaKnown RBP eCLIP13.25□□□□□ -0.29
CUX1-209ENST00000487284 GNA13Q14344 377 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 PRICKLE4Q2TBC4 344 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 EXOSC6Q5RKV6 272 aaKnown RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 OTUD3Q5T2D3 398 aaPredicted RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 YOD1Q5VVQ6 348 aaPredicted RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 CDC73Q6P1J9 531 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 UGT2A3Q6UWM9 527 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 BPHLQ86WA6 291 aaPredicted RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 CARM1Q86X55 608 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 MARCH9Q86YJ5 346 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 HIPK1Q86Z02 1210 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 ZNF595Q8IYB9 648 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 SLC38A9Q8NBW4 561 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 APOBEC4Q8WW27 367 aaKnown RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 MVB12AQ96EY5 273 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 MMABQ96EY8 250 aaPredicted RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 RDH12Q96NR8 316 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 ZNF607Q96SK3 696 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 YIPF4Q9BSR8 244 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 ADI1Q9BV57 179 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 ANKRD60Q9BZ19 345 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 RUBCNLQ9H714 662 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 EQTNQ9NQ60 294 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 SLC39A1Q9NY26 324 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 MAT2BQ9NZL9 334 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 NDUFAF4Q9P032 175 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 SRPK3Q9UPE1 567 aa13.25□□□□□ -0.29
CUX1-209ENST00000487284 MRPS33Q9Y291 106 aaKnown RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 MAGED1Q9Y5V3 778 aaPredicted RBP13.25□□□□□ -0.29
CUX1-209ENST00000487284 MAGEA13PA6NCF6 341 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 PRAMEF25A6NGN4 478 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 PLD2O14939 933 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 DSCR3O14972 297 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 CTNSO60931 367 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 DIRAS1O95057 198 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 BMP10O95393 424 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 RECKO95980 971 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 LYNP07948 512 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 JMJD7P0C870 316 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 UBTFL6P0CB48 400 aaPredicted RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 SLC35E2P0CK97 266 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 ETS2P15036 469 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 TNFRSF1BP20333 461 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 FPR1P21462 350 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 DNAJA1P31689 397 aaKnown RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 OR1D4P47884 311 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 MGAT2Q10469 447 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 BLMHQ13867 455 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 SYT16Q17RD7 645 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 C1orf189Q5VU69 101 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 HEPHL1Q6MZM0 1159 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 RHBDD2Q6NTF9 364 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 KRT73Q86Y46 540 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 RASSF5Q8WWW0 418 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 ADAMTS14Q8WXS8 1223 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 CTHRC1Q96CG8 243 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 NRBF2Q96F24 287 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 OTUB1Q96FW1 271 aaPredicted RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 PEX11GQ96HA9 241 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 CNBD2Q96M20 576 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 ZNF300Q96RE9 604 aaPredicted RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 ZNF347Q96SE7 839 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 RBM4BQ9BQ04 359 aaKnown RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 RBM4Q9BWF3 364 aaKnown RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 BTBD2Q9BX70 525 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 SLC7A5P2Q9GIP4 190 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 DLL3Q9NYJ7 618 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 UBAP1Q9NZ09 502 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 PISDQ9UG56 409 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 LIPT1Q9Y234 373 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 MAU2Q9Y6X3 613 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 DCHS1Q96JQ0 3298 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 A0A0G2JPF8 293 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 A0A1B0GX78 115 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 DCDC2BA2VCK2 349 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 DUXAA6NLW8 204 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 HNRNPCL2B2RXH8 293 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 HNRNPCL3B7ZW38 293 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms