RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 DCAF7P61962 342 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 SLC25A3Q00325 362 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 SELPLGQ14242 412 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 COX20Q5RI15 118 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.34□□□□□ -0.59
SDC1-206ENST00000482879 IRAK1BP1Q5VVH5 260 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 TCTN3Q6NUS6 607 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 JMJD6Q6NYC1 403 aaPredicted RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 CDC73Q6P1J9 531 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 TNFAIP8L2Q6P589 184 aaPredicted RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 C16orf89Q6UX73 402 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 RINLQ6ZS11 566 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 CCDC121Q6ZUS5 278 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 SLC44A2Q8IWA5 706 aaPredicted RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 OR52N2Q8NGI0 321 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 NUBPLQ8TB37 319 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 MIPOL1Q8TD10 442 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 BRIX1Q8TDN6 353 aaKnown RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 ADAMTS15Q8TE58 950 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 ADIPOR1Q96A54 375 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 OTUB1Q96FW1 271 aaPredicted RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 LCORQ96JN0 433 aaPredicted RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 OR7D2Q96RA2 312 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 SH3GL1Q99961 368 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 GPATCH1Q9BRR8 931 aaKnown RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 LMF2Q9BU23 707 aaKnown RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 TRIM8Q9BZR9 551 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 LHPPQ9H008 270 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 OR51I1Q9H343 314 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 SERHL2Q9H4I8 314 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 IKZF5Q9H5V7 419 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 CDCP1Q9H5V8 836 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 NDE1Q9NXR1 346 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 CORO2BQ9UQ03 480 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 GPR55Q9Y2T6 319 aaPredicted RBP11.34□□□□□ -0.59
SDC1-206ENST00000482879 CELSR3Q9NYQ7 3312 aa11.34□□□□□ -0.59
SDC1-206ENST00000482879 ASPMQ8IZT6 3477 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 C15orf38-AP3S2A0A0A6YYH1 394 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 A6NL46 340 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 DUXAA6NLW8 204 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 WWP2O00308 870 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 ATP5HO75947 161 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 OR12D1P0DN82 309 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 ETFAP13804 333 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 DRD5P21918 477 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 SLC6A2P23975 617 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 MAP3K8P41279 467 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 MAGEA8P43361 318 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 MAN2A2P49641 1150 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 KHKP50053 298 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 ANXA11P50995 505 aaKnown RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 NR0B1P51843 470 aaKnown RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 MVDP53602 400 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 CORO7P57737 925 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 TXNL4AP83876 142 aaKnown RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 FOXK2Q01167 660 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 RGNQ15493 299 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 NNATQ16517 81 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 DUSP5Q16690 384 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 RABL3Q5HYI8 236 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 EXOSC6Q5RKV6 272 aaKnown RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 FCRLBQ6BAA4 426 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 H3F3CQ6NXT2 135 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 C8orf82Q6P1X6 216 aaPredicted RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 C16orf47Q6ZP98 133 aaPredicted RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 ARPINQ7Z6K5 226 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 RPS19BP1Q86WX3 136 aaKnown RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 GALNT16Q8N428 558 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 SLC5A8Q8N695 610 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 SIRT6Q8N6T7 355 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 HORMAD2Q8N7B1 307 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 ZNF441Q8N8Z8 693 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 SLC16A11Q8NCK7 471 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 RBM15BQ8NDT2 890 aaKnown RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 OR8J3Q8NGG0 315 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 OR5D16Q8NGK9 328 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 GPR151Q8TDV0 419 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 XAGE5Q8WWM1 108 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 PSMF1Q92530 271 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 HOXB13Q92826 284 aaPredicted RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 RAB8BQ92930 207 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 TP53INP1Q96A56 240 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 SLC35A4Q96G79 324 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 BTBD9Q96Q07 612 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 NXF5Q9H1B4 397 aaKnown RBP11.33□□□□□ -0.6
SDC1-206ENST00000482879 PIGUQ9H490 435 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 MYOTQ9UBF9 498 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 L3MBTL1Q9Y468 752 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 OR10H1Q9Y4A9 318 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 KCNMB2Q9Y691 235 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 GMEB1Q9Y692 573 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 EML6Q6ZMW3 1958 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 DMXL2Q8TDJ6 3036 aa11.33□□□□□ -0.6
SDC1-206ENST00000482879 NINQ8N4C6 2090 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 EXPH5Q8NEV8 1989 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 CPAMD8Q8IZJ3 1885 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 GXYLT2A0PJZ3 443 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 FRG2CA6NGY1 282 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 TMEM200CA6NKL6 621 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 HNRNPCL1O60812 293 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms