RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 NUDT8Q8WV74 236 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 MTERF3Q96E29 417 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 ELP4Q96EB1 424 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 MAGED4Q96JG8 741 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 PSMG3-AS1Q96PY0 264 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 BTBD9Q96Q07 612 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 AKTIPQ9H8T0 292 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 ZDHHC11Q9H8X9 412 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 DDX18Q9NVP1 670 aaKnown RBP14.32□□□□□ -0.12
HMGA1-206ENST00000478214 TAS2R9Q9NYW1 312 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 C19orf53Q9UNZ5 99 aaPredicted RBP14.32□□□□□ -0.12
HMGA1-206ENST00000478214 ZNF835Q9Y2P0 537 aa14.32□□□□□ -0.12
HMGA1-206ENST00000478214 SPTBN1Q01082 2364 aaKnown RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 A0A1B0GTH9 108 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 A0A1B0GUH1 482 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 WIPF3A6NGB9 483 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 UPK1AO00322 258 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 SCAMP2O15127 329 aaKnown RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 TO15178 435 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 COQ9O75208 318 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 ERN1O75460 977 aaKnown RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 SLITRK5O94991 958 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 CT45A8P0DMV1 189 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 CT45A9P0DMV2 189 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 PRPS2P11908 318 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 H2AFXP16104 143 aaPredicted RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 NAGAP17050 411 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 EFNA1P20827 205 aaPredicted RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 HPCAL1P37235 193 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 CA7P43166 264 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 MAGEA5P43359 124 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 EMX2Q04743 252 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 ZNF155Q12901 538 aaPredicted RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.31□□□□□ -0.123e-6■□□□□ 10.5
HMGA1-206ENST00000478214 CT45A2Q5DJT8 189 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 RGS9BPQ6ZS82 235 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 R3HCC1LQ7Z5L2 792 aaKnown RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 SLC34A3Q8N130 599 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 OR2L13Q8N349 312 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 OR7A2PQ8NGA2 310 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 TMBIM1Q969X1 311 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 RELTQ969Z4 430 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 SECISBP2Q96T21 854 aaKnown RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 DOHHQ9BU89 302 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 NUF2Q9BZD4 464 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 ZFP64Q9NPA5 681 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 ATP6V1HQ9UI12 483 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 TINAGQ9UJW2 476 aa14.31□□□□□ -0.12
HMGA1-206ENST00000478214 EIF3LQ9Y262 564 aaKnown RBP14.31□□□□□ -0.12
HMGA1-206ENST00000478214 UTP20O75691 2785 aaKnown RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 ANKRD33BA6NCL7 494 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 LRRC3CA6NJW4 275 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 UGT2B11O75310 529 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 SNNO75324 88 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 REM1O75628 298 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 PSMG1O95456 288 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 CELA3AP09093 270 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 RFPL3SP0C7P2 107 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 LAMP1P11279 417 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 G6PDP11413 515 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 ABOP16442 354 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 GPC1P35052 558 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 CASP3P42574 277 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 FRKP42685 505 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 CDK9P50750 372 aaKnown RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 MANFP55145 182 aaKnown RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 HYAL4Q2M3T9 481 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 Q6ZPB1 254 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 NUP54Q7Z3B4 507 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 WDR53Q7Z5U6 358 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 SLC44A2Q8IWA5 706 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 KIRREL3Q8IZU9 778 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 FAM109AQ8N4B1 249 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 KRTCAP2Q8N6L1 136 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 HGDQ93099 445 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 ZBED6CLQ96FA7 236 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 JSRP1Q96MG2 331 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 RILPQ96NA2 401 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 NODALQ96S42 347 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 ANGPTL4Q9BY76 406 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 PLSCR2Q9NRY7 297 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 ACSS1Q9NUB1 689 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 THAP1Q9NVV9 213 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 ARGLU1Q9NWB6 273 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 BOKQ9UMX3 212 aaPredicted RBP14.3□□□□□ -0.12
HMGA1-206ENST00000478214 LIPGQ9Y5X9 500 aa14.3□□□□□ -0.12
HMGA1-206ENST00000478214 DIDO1Q9BTC0 2240 aaKnown RBP14.29□□□□□ -0.12
HMGA1-206ENST00000478214 CCL21O00585 134 aa14.29□□□□□ -0.12
HMGA1-206ENST00000478214 ZG16O60844 167 aa14.29□□□□□ -0.12
HMGA1-206ENST00000478214 TRIM3O75382 744 aaPredicted RBP14.29□□□□□ -0.12
HMGA1-206ENST00000478214 PTGS2P35354 604 aa14.29□□□□□ -0.12
HMGA1-206ENST00000478214 RPL3P39023 403 aaKnown RBP14.29□□□□□ -0.12
HMGA1-206ENST00000478214 CASP6P55212 293 aa14.29□□□□□ -0.12
HMGA1-206ENST00000478214 PER3P56645 1201 aa14.29□□□□□ -0.12
HMGA1-206ENST00000478214 RPP38P78345 283 aaKnown RBP14.29□□□□□ -0.12
HMGA1-206ENST00000478214 PSG6Q00889 435 aa14.29□□□□□ -0.12
HMGA1-206ENST00000478214 MAD2L1Q13257 205 aaPredicted RBP14.29□□□□□ -0.12
HMGA1-206ENST00000478214 TTMPQ5BVD1 217 aa14.29□□□□□ -0.12
HMGA1-206ENST00000478214 TBCELQ5QJ74 424 aa14.29□□□□□ -0.12
HMGA1-206ENST00000478214 ATG16L1Q676U5 607 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms