RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 ZNF267Q14586 743 aaPredicted RBP17.7■□□□□ 0.42
SMC4-209ENST00000468653 MLIPQ5VWP3 458 aa17.7■□□□□ 0.42
SMC4-209ENST00000468653 RHBDD2Q6NTF9 364 aa17.7■□□□□ 0.42
SMC4-209ENST00000468653 SHQ1Q6PI26 577 aaKnown RBP17.7■□□□□ 0.42
SMC4-209ENST00000468653 HS3ST5Q8IZT8 346 aa17.7■□□□□ 0.42
SMC4-209ENST00000468653 GPR32P1Q8NGA4 272 aa17.7■□□□□ 0.42
SMC4-209ENST00000468653 ZNF300Q96RE9 604 aaPredicted RBP17.7■□□□□ 0.42
SMC4-209ENST00000468653 SMPD3Q9NY59 655 aaPredicted RBP17.7■□□□□ 0.42
SMC4-209ENST00000468653 ADAMTS20P59510 1910 aa17.7■□□□□ 0.42
SMC4-209ENST00000468653 DPM1O60762 260 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 YAP1P46937 504 aaKnown RBP17.69■□□□□ 0.42
SMC4-209ENST00000468653 PGDP52209 483 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 CHRNEQ04844 493 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 MED25Q71SY5 747 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 TSEN54Q7Z6J9 526 aaKnown RBP17.69■□□□□ 0.42
SMC4-209ENST00000468653 RNF31Q96EP0 1072 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 ZNF354BQ96LW1 612 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 STACQ99469 402 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 CNPPD1Q9BV87 410 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 SLC38A1Q9H2H9 487 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 DUSP22Q9NRW4 184 aa17.69■□□□□ 0.42
SMC4-209ENST00000468653 IFT80Q9P2H3 777 aaPredicted RBP17.69■□□□□ 0.42
SMC4-209ENST00000468653 PRAMEF25A6NGN4 478 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 DLGAP1O14490 977 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 ADAMDEC1O15204 470 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 SCRG1O75711 98 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 ALPPP05187 535 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 GP1BAP07359 652 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 S1PR1P21453 382 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 FPR1P21462 350 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 PRKACGP22612 351 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 ACP1P24666 158 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 RRM2P31350 389 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 PDX1P52945 283 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 NUBP1P53384 320 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 TRA2AQ13595 282 aaKnown RBP eCLIP17.68■□□□□ 0.421e-6■■■□□ 18.2
SMC4-209ENST00000468653 ARHGAP11BQ3KRB8 267 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 NHSL2Q5HYW2 709 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 HMGN2P46Q86SG4 172 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 COX18Q8N8Q8 333 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 GPR151Q8TDV0 419 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 CLIP3Q96DZ5 547 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 CNBD2Q96M20 576 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 ZNF578Q96N58 590 aaPredicted RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 NR1H4Q96RI1 486 aaPredicted RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 RBM4BQ9BQ04 359 aaKnown RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 RBM4Q9BWF3 364 aaKnown RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 AMBRA1Q9C0C7 1298 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 SMURF2Q9HAU4 748 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 MKKSQ9NPJ1 570 aaPredicted RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 SIDT1Q9NXL6 827 aaKnown RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 TESMINQ9Y4I5 508 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 ENPP4Q9Y6X5 453 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 HPRP00739 348 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 ALPLP05186 524 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 SSTR4P31391 388 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 GALNSP34059 522 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 GABRA3P34903 492 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 PUM1Q14671 1186 aaKnown RBP eCLIP17.68■□□□□ 0.42
SMC4-209ENST00000468653 PDK3Q15120 406 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 SF3A2Q15428 464 aaKnown RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 ZNHIT3Q15649 155 aaPredicted RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 VWA2Q5GFL6 755 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 EXOSC6Q5RKV6 272 aaKnown RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 SWT1Q5T5J6 900 aaKnown RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 PWWP2BQ6NUJ5 590 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 QSOX2Q6ZRP7 698 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 PPP1R3BQ86XI6 285 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 EPYCQ99645 322 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 OSBPL10Q9BXB5 764 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 TRIM45Q9H8W5 580 aaPredicted RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 CACYBPQ9HB71 228 aaKnown RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 C11orf16Q9NQ32 467 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 PNO1Q9NRX1 252 aaKnown RBP17.68■□□□□ 0.42
SMC4-209ENST00000468653 OCIAD1Q9NX40 245 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 WDR45Q9Y484 360 aa17.68■□□□□ 0.42
SMC4-209ENST00000468653 DNAJB5O75953 348 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 TIAF1O95411 115 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 SPIBQ01892 262 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 MERTKQ12866 999 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 DUSP8Q13202 625 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 ZNF311Q5JNZ3 666 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 B3GNT8Q7Z7M8 397 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 CARM1Q86X55 608 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 PRSS58Q8IYP2 241 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 MARVELD2Q8N4S9 558 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 C7orf57Q8NEG2 295 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 PIK3R3Q92569 461 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 NRBF2Q96F24 287 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 SDF2Q99470 211 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 PIP5K1AQ99755 562 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 ADI1Q9BV57 179 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 RSPO3Q9BXY4 272 aaPredicted RBP17.67■□□□□ 0.42
SMC4-209ENST00000468653 QRSL1Q9H0R6 528 aaKnown RBP17.67■□□□□ 0.42
SMC4-209ENST00000468653 USE1Q9NZ43 259 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 ERVK-19Q9WJR5 959 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 GPR179Q6PRD1 2367 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 SEC16AO15027 2179 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 DSPPQ9NZW4 1301 aa17.67■□□□□ 0.42
SMC4-209ENST00000468653 EFCAB7A8K855 629 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms