RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SAMD14Q8IZD0 417 aaPredicted RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 GHDCQ8N2G8 530 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 LIX1Q8N485 282 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 KIF2BQ8N4N8 673 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 FAM98AQ8NCA5 519 aaKnown RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 APCDD1LQ8NCL9 501 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 WFDC11Q8NEX6 87 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 SLC2A12Q8TD20 617 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 NCLNQ969V3 563 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 EXOSC8Q96B26 276 aaKnown RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 PPWD1Q96BP3 646 aaKnown RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 MBD6Q96DN6 1003 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF764Q96H86 408 aaPredicted RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF681Q96N22 645 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 C1orf50Q9BV19 199 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 UCK2Q9BZX2 261 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 TSPAN10Q9H1Z9 355 aaPredicted RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 SLC35C2Q9NQQ7 365 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 ANKRD10Q9NXR5 420 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 TAS2R7Q9NYW3 318 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 NOP53Q9NZM5 478 aaKnown RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 LRFN1Q9P244 771 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 BAIAP2L1Q9UHR4 511 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 NPIPA1Q9UND3 350 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 EXO1Q9UQ84 846 aaKnown RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 EIF3LQ9Y262 564 aaKnown RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 PLEKHA6Q9Y2H5 1048 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 USH1CQ9Y6N9 552 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF780BQ9Y6R6 833 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 HRNRQ86YZ3 2850 aaPredicted RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 ASPDHA6ND91 283 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 FCHO1O14526 889 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF195O14628 629 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 MAN1A2O60476 641 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 NEURL1O76050 574 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 ATP1B1P05026 303 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 CHRNB4P30926 498 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 FEN1P39748 380 aaKnown RBP10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 CYB561P49447 251 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 HLCSP50747 726 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 DUSP2Q05923 314 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 FAM180BQ6P0A1 224 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 FAM47EQ6ZV65 393 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 MAVSQ7Z434 540 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 LRRC25Q8N386 305 aaPredicted RBP10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 CLHC1Q8NHS4 586 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF721Q8TF20 911 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 RIT1Q92963 219 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 GFM2Q969S9 779 aaKnown RBP10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 MTERF3Q96E29 417 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 FBXL20Q96IG2 436 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 MAELQ96JY0 434 aaKnown RBP10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 ART5Q96L15 291 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 OR8D2Q9GZM6 311 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 REEP4Q9H6H4 257 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 KLHL1Q9NR64 748 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 GIMAP4Q9NUV9 329 aa10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF223Q9UK11 482 aaPredicted RBP10.99□□□□□ -0.65
SQSTM1-206ENST00000466342 EXPH5Q8NEV8 1989 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 GOLGA8QA0A0J9YX86 632 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 TRBV11-1A0A0K0K1C0 115 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 GOLGA8OA6NCC3 632 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 FAM90A27PA6NNH2 459 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 GOLGA8NF8WBI6 632 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 AKAP10O43572 662 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 TBX19O60806 448 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 LRATO95237 230 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 TGDSO95455 350 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 IGKV3-11P04433 115 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 G6PDP11413 515 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 NT5EP21589 574 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 EPHA3P29320 983 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 HPCAL1P37235 193 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 RPL3P39023 403 aaKnown RBP10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 PDE7AQ13946 482 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF267Q14586 743 aaPredicted RBP10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 PTGR1Q14914 329 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 MAPKAPK3Q16644 382 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 PRSS53Q2L4Q9 553 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 PRICKLE4Q2TBC4 344 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 SLC9B1Q4ZJI4 515 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 C6orf163Q5TEZ5 329 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF468Q5VIY5 522 aaPredicted RBP10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 TMEM211Q6ICI0 200 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 GALNTL5Q7Z4T8 443 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 R3HCC1LQ7Z5L2 792 aaKnown RBP10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 CHERPQ8IWX8 916 aaKnown RBP10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 GALNT12Q8IXK2 581 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF321PQ8N8H1 164 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 TMEM125Q96AQ2 219 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 PPCDCQ96CD2 204 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 RMND5BQ96G75 393 aaPredicted RBP10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 SENP5Q96HI0 755 aaPredicted RBP10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 CNPPD1Q9BV87 410 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 HES7Q9BYE0 225 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 WDR55Q9H6Y2 383 aaPredicted RBP10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 CXorf21Q9HAI6 301 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 COPS7AQ9UBW8 275 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 ERVK-19Q9WJR5 959 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 RNF6Q9Y252 685 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms