RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 C9orf40Q8IXQ3 194 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 GHDCQ8N2G8 530 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 TMEM156Q8N614 296 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 KRTCAP2Q8N6L1 136 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 NATD1Q8N6N6 113 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 OR7A2PQ8NGA2 310 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 NUBPLQ8TB37 319 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 KAT2AQ92830 837 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 ERP27Q96DN0 273 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 ZBED6CLQ96FA7 236 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-205ENST00000465238 AMDHD1Q96NU7 426 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 GLIPR2Q9H4G4 154 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 MYOTQ9UBF9 498 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF639Q9UID6 485 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 CFL2Q9Y281 166 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 PDZD2O15018 2839 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 WWP2O00308 870 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 EDF1O60869 148 aaKnown RBP16.35■□□□□ 0.21
COL7A1-205ENST00000465238 OR2J2O76002 312 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 SLITRK5O94991 958 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 ABOP16442 354 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 S1PR1P21453 382 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 AQP5P55064 265 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 MANFP55145 182 aaKnown RBP16.35■□□□□ 0.21
COL7A1-205ENST00000465238 GUCY1A3Q02108 690 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 EXOSC7Q15024 291 aaKnown RBP16.35■□□□□ 0.21
COL7A1-205ENST00000465238 GDF7Q7Z4P5 450 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF227Q86WZ6 799 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 RIMKLAQ8IXN7 391 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF615Q8N8J6 731 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 POGLUT1Q8NBL1 392 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 CIDECQ96AQ7 238 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-205ENST00000465238 CTHRC1Q96CG8 243 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 OR52B2Q96RD2 323 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 GAL3ST4Q96RP7 486 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 WWTR1Q9GZV5 400 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 ACSS1Q9NUB1 689 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-205ENST00000465238 AIG1Q9NVV5 245 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 MEMO1Q9Y316 297 aa16.35■□□□□ 0.21
COL7A1-205ENST00000465238 C2orf92A0A1B0GVN3 265 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 TMEM200CA6NKL6 621 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 UBDO15205 165 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 POLR3GO15318 223 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 CLPSP04118 112 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 ALDOCP09972 364 aaKnown RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 LAMP1P11279 417 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 COX6B1P14854 86 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 ELAVL4P26378 380 aaKnown RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 GPC1P35052 558 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 MDH1P40925 334 aaKnown RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 IDH3AP50213 366 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 SSR4P51571 173 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 C21orf58P58505 322 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 HSPB3Q12988 150 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 PGS1Q32NB8 556 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 LSM12Q3MHD2 195 aaKnown RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 C16orf47Q6ZP98 133 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF551Q7Z340 670 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 CPSF7Q8N684 471 aaKnown RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 OR52R1Q8NGF1 315 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 COQ8BQ96D53 544 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 DUSP26Q9BV47 211 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 TCF7L2Q9NQB0 619 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 PRODH2Q9UF12 536 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 KLF13Q9Y2Y9 288 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-205ENST00000465238 ADGRG4Q8IZF6 3080 aa16.34■□□□□ 0.21
COL7A1-205ENST00000465238 A0A1W2PRB8 838 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 PLOD3O60568 738 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 CBX7O95931 251 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 VIMP08670 466 aaKnown RBP16.33■□□□□ 0.2
COL7A1-205ENST00000465238 IDO1P14902 403 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 CLNS1AP54105 237 aaKnown RBP16.33■□□□□ 0.2
COL7A1-205ENST00000465238 NME5P56597 212 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 EBPQ15125 230 aaKnown RBP16.33■□□□□ 0.2
COL7A1-205ENST00000465238 GSTA3Q16772 222 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 MPEG1Q2M385 716 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 PIGGQ5H8A4 983 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 RNFT1Q5M7Z0 435 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 TMEM107Q6UX40 140 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 EID3Q8N140 333 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 OR7G2Q8NG99 324 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 C16orf52Q8NHV5 167 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 SLC22A8Q8TCC7 542 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 NUDT8Q8WV74 236 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 ASB15Q8WXK1 588 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 TP53INP1Q96A56 240 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 ELP4Q96EB1 424 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 THOC1Q96FV9 657 aaKnown RBP16.33■□□□□ 0.2
COL7A1-205ENST00000465238 RASL10BQ96S79 203 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 ZBTB18Q99592 522 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 CCDC28BQ9BUN5 200 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 BHLHE41Q9C0J9 482 aaPredicted RBP16.33■□□□□ 0.2
COL7A1-205ENST00000465238 ERVK-11Q9UQG0 969 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 GPR45Q9Y5Y3 372 aa16.33■□□□□ 0.2
COL7A1-205ENST00000465238 TEP1Q99973 2627 aaKnown RBP16.33■□□□□ 0.2
COL7A1-205ENST00000465238 A0A087WV62 115 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 KLRC4-KLRK1H3BQV0 150 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 PLOD2O00469 737 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 PRRG2O14669 202 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 COQ9O75208 318 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms