RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 STX4Q12846 297 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ARL6IP1Q15041 203 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 GPR68Q15743 365 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CCDC6Q16204 474 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC35D3Q5M8T2 416 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 LCE2AQ5TA79 106 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM46CQ5VWP2 391 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PLCXD3Q63HM9 321 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CLEC18BQ6UXF7 455 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 RPTNQ6XPR3 784 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 BBS12Q6ZW61 710 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 GPAT4Q86UL3 456 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 IRF2BP1Q8IU81 584 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SERPINA12Q8IW75 414 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SPAG16Q8N0X2 631 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZBTB2Q8N680 514 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 C12orf76Q8N812 135 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CLEC18CQ8NCF0 446 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 OR5M8Q8NGP6 311 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZHX1-C8orf76Q96EF9 292 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 DYNLL2Q96FJ2 89 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 OXNAD1Q96HP4 312 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SIGLEC11Q96RL6 698 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MRI1Q9BV20 369 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MND1Q9BWT6 205 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 NPLQ9BXD5 320 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 DGCR6LQ9BY27 220 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ELOVL4Q9GZR5 314 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 EBF3Q9H4W6 596 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF430Q9H8G1 570 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CSNK1G1Q9HCP0 422 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MKKSQ9NPJ1 570 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PPANQ9NQ55 473 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SIDT1Q9NXL6 827 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 TAS2R9Q9NYW1 312 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CCDC59Q9P031 241 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 XPR1Q9UBH6 696 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SHOC2Q9UQ13 582 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CA5BQ9Y2D0 317 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MRPS18CQ9Y3D5 142 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 TBL2Q9Y4P3 447 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 VCANP13611 3396 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 IGKV6D-41A0A0C4DH26 115 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TEX13DA0A0J9YY54 714 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 A0A1B0GUH1 482 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 LINC00862A6NCI5 91 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 KLK10O43240 276 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 DLEU1O43261 78 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ITM2AO43736 263 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 EIF3GO75821 320 aaKnown RBP eCLIP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 B3GAT3O94766 335 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SEC24AO95486 1093 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 BMP15O95972 392 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 CYB5R3P00387 301 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PAEPP09466 180 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 RPA2P15927 270 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF18P17022 549 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TPH1P17752 444 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SPI1P17947 270 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NR1D1P20393 614 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PRKCHP24723 683 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 DNASE1P24855 282 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FPR3P25089 353 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 CEACAM6P40199 344 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ETV4P43268 484 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TGM4P49221 684 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FMO5P49326 533 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 STK19P49842 368 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ATP5J2P56134 94 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 IRF8Q02556 426 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NHLH2Q02577 135 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 BST1Q10588 318 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SPP2Q13103 211 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 OLIG2Q13516 323 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 MPPED2Q15777 294 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM214AQ32MH5 1076 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 RNF212Q495C1 297 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 C19orf54Q5BKX5 351 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ACSBG2Q5FVE4 666 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 TYW3Q6IPR3 259 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FAHD2BQ6P2I3 314 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 LRRN1Q6UXK5 716 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 WDR88Q6ZMY6 472 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PID1Q7Z2X4 250 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NLRX1Q86UT6 975 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 WFDC3Q8IUB2 231 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 C1orf210Q8IVY1 113 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ZFP82Q8N141 532 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM58AQ8N1B3 248 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SPATA6LQ8N4H0 392 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 KIF2BQ8N4N8 673 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 ARRDC1Q8N5I2 433 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 NHLRC2Q8NBF2 726 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 PDPRQ8NCN5 879 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC44A5Q8NCS7 719 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 CCNYQ8ND76 341 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM46DQ8NEK8 389 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 BHLHE22Q8NFJ8 381 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 OR13F1Q8NGS4 319 aa4.52□□□□□ -1.69
CCDC88A-209ENST00000456975 STOML3Q8TAV4 291 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms