RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PGAM4Q8N0Y7 254 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 DPP10Q8N608 796 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 TRIML2Q8N7C3 387 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 OR4K14Q8NGD5 310 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 NUDT8Q8WV74 236 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 TANKQ92844 425 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 MCUR1Q96AQ8 359 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 IMMP1LQ96LU5 166 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 LRMDAQ9H2I8 198 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 IL1RL2Q9HB29 575 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 SLC52A3Q9NQ40 469 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 PRTFDC1Q9NRG1 225 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 ACSS1Q9NUB1 689 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-208ENST00000437607 TAS2R7Q9NYW3 318 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 ABI3Q9P2A4 366 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 BTNL2Q9UIR0 455 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 MMACHCQ9Y4U1 282 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 ZNF469Q96JG9 3925 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-208ENST00000437607 MAP1AP78559 2803 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 PHF3Q92576 2039 aaKnown RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 A0A096LPI6 279 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 SYNDIG1LA6NDD5 238 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 CCL21O00585 134 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 PGRMC2O15173 223 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 FGF17O60258 216 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 B4GALT2O60909 372 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 DNAJB6O75190 326 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 ERN1O75460 977 aaKnown RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 CPSF4O95639 269 aaKnown RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 HEXBP07686 556 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 CA7P43166 264 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 TRPC1P48995 793 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 HNRNPFP52597 415 aaKnown RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 MANFP55145 182 aaKnown RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 WNT3P56703 355 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 FOLH1Q04609 750 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 STX4Q12846 297 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 SPDYE7PQ495Y7 208 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 MINDY4Q4G0A6 757 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 BNC2Q6ZN30 1099 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 RINLQ6ZS11 566 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 SZRD1Q7Z422 152 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 ARHGAP24Q8N264 748 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 ZNF808Q8N4W9 903 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 OR5P2Q8WZ92 322 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 GTF2H4Q92759 462 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 CGREF1Q99674 301 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 PELOQ9BRX2 385 aaKnown RBP11.28□□□□□ -0.6
PTPRF-208ENST00000437607 RNF32Q9H0A6 362 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.28□□□□□ -0.66e-7■■■□□ 17.6
PTPRF-208ENST00000437607 ZNF700Q9H0M5 742 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 C1orf21Q9H246 121 aa11.28□□□□□ -0.6
PTPRF-208ENST00000437607 RNF103-CHMP3A0A140T963 221 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 OR5H15A6NDH6 313 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 FAM227AF5H4B4 570 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 FXYD1O00168 92 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 OR10H2O60403 315 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 PRAMEF2O60811 474 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 LDB3O75112 727 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 RASAL1O95294 804 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 GPR75O95800 540 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 NPPAP01160 153 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 C8orf89P0DMQ9 161 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 CPMP14384 443 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 HTR1EP28566 365 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 MPIP34949 423 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 FEN1P39748 380 aaKnown RBP11.27□□□□□ -0.61
PTPRF-208ENST00000437607 FRKP42685 505 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-208ENST00000437607 HSD17B7P56937 341 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 PSME3P61289 254 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 PHC1P78364 1004 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 ADORA2A-AS1P86434 159 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SLC25A3Q00325 362 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 ID2Q02363 134 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SERTAD2Q14140 314 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 CAPRIN1Q14444 709 aaKnown RBP11.27□□□□□ -0.61
PTPRF-208ENST00000437607 CDSNQ15517 529 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF630Q2M218 657 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-208ENST00000437607 MPEG1Q2M385 716 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 LRIF1Q5T3J3 769 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 FAM180BQ6P0A1 224 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 ANGPTL8Q6UXH0 198 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 QSOX2Q6ZRP7 698 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SCUBE1Q8IWY4 988 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 DEFB107AQ8IZN7 70 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 TMEM52Q8NDY8 209 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 C7orf57Q8NEG2 295 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 FBXO27Q8NI29 283 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SLC7A6OSQ96CW6 309 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-208ENST00000437607 LRRC58Q96CX6 371 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 CNRIP1Q96F85 164 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-208ENST00000437607 LURAP1Q96LR2 239 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 AMDHD1Q96NU7 426 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 BTBD10Q9BSF8 475 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 INPP5KQ9BT40 448 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 TRIM8Q9BZR9 551 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SPAG4Q9NPE6 437 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SERHLQ9NQF3 203 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 TAS2R9Q9NYW1 312 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SEC14L3Q9UDX4 400 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms