RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CCDC103Q8IW40 242 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 SLC22A18ASQ8N1D0 253 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 STX19Q8N4C7 294 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 MINDY2Q8NBR6 621 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 GPR32P1Q8NGA4 272 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 UTP15Q8TED0 518 aaKnown RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 NR4A3Q92570 626 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 UBE2FQ969M7 185 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 AMDHD1Q96NU7 426 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 RHNO1Q9BSD3 238 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 SLC17A9Q9BYT1 436 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 UCK2Q9BZX2 261 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 RACGAP1Q9H0H5 632 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 KIR3DX1Q9H7L2 352 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 IMP3Q9NV31 184 aaKnown RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 UCKL1Q9NWZ5 548 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 TEX10Q9NXF1 929 aaPredicted RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 RAXQ9Y2V3 346 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 GPC6Q9Y625 555 aaPredicted RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 DGKBQ9Y6T7 804 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 IGKV1-8A0A0C4DH67 115 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 EFCAB9A8MZ26 197 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 SIGLEC6O43699 453 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 SLC28A2O43868 658 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 LCMT2O60294 686 aaKnown RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 NADKO95544 446 aaPredicted RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 PAK4O96013 591 aaPredicted RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 LCKP06239 509 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 H1F0P07305 194 aaKnown RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 OSMP13725 252 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 CMPK1P30085 196 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 IGFALSP35858 605 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 UGT2B15P54855 530 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 MLLT10P55197 1068 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 KIAA1024LP59773 190 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 SNRPGP62308 76 aaKnown RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 ALDH6A1Q02252 535 aaKnown RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.92□□□□□ -0.18
USP4-203ENST00000415188 ILKQ13418 452 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 TP53BP2Q13625 1128 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 DGCR6Q14129 220 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 NDUFA9Q16795 377 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 TIGD6Q17RP2 521 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 ANKDD1AQ495B1 522 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 ZNF542PQ5EBM4 170 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 RPS26P11Q5JNZ5 115 aaPredicted RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 DCST1Q5T197 706 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 NDUFAF5Q5TEU4 345 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 MRM1Q6IN84 353 aaKnown RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 C19orf48Q6RUI8 117 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 KLHL17Q6TDP4 642 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 Q6ZPB1 254 aaPredicted RBP13.92□□□□□ -0.18
USP4-203ENST00000415188 Q6ZSR6 202 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 ABI3BPQ7Z7G0 1075 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 TMPRSS12Q86WS5 348 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 TMCO5AQ8N6Q1 288 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 MFSD9Q8NBP5 474 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 FAM46DQ8NEK8 389 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 OR56A1Q8NGH5 318 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 OR6Q1Q8NGQ2 317 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 NDNFQ8TB73 568 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 LGALS12Q96DT0 336 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 BMFQ96LC9 184 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 Q96MT0 163 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 DACH2Q96NX9 599 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 BBS4Q96RK4 519 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 BTBD2Q9BX70 525 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 CDCA4Q9BXL8 241 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 ABCG4Q9H172 646 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 GLIPR2Q9H4G4 154 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 OSGIN1Q9UJX0 560 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 SNX7Q9UNH6 387 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 LHX6Q9UPM6 363 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 COLEC10Q9Y6Z7 277 aa13.92□□□□□ -0.18
USP4-203ENST00000415188 hCG_2014768A0A024R1R8 64 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 POM121BA6NF01 834 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 KPNA4O00629 521 aaPredicted RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 MAN1A2O60476 641 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 B4GALT2O60909 372 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 CNOT3O75175 753 aaKnown RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 SULT1C4O75897 302 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 HIST1H1TP22492 207 aaPredicted RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 NR4A1P22736 598 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 CHMP24386 653 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 ELAVL4P26378 380 aaKnown RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 GPC1P35052 558 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 BCL6P41182 706 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 SLC19A1P41440 591 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 CRISP3P54108 245 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 LIM2P55344 173 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 RPS26P62854 115 aaKnown RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 GANABQ14697 944 aaKnown RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 PTGES3Q15185 160 aaKnown RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 MAPK11Q15759 364 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 RPE65Q16518 533 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 TMEM201Q5SNT2 666 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 HES3Q5TGS1 186 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 MEDAGQ5VYS4 303 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 SLX4IPQ5VYV7 408 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 DCDC5Q6ZRR9 648 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms