RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 HLA-DQB1P01920 261 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 RB1P06400 928 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 PEBP1P30086 187 aaKnown RBP9.27□□□□□ -0.93
SS18-203ENST00000415083 VIPR2P41587 438 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 NDUFAF5Q5TEU4 345 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 C18orf63Q68DL7 685 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 TMEM91Q6ZNR0 172 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 ERN2Q76MJ5 926 aaKnown RBP9.27□□□□□ -0.93
SS18-203ENST00000415083 CLDN22Q8N7P3 220 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 ATP6V1C2Q8NEY4 427 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 OR4M1Q8NGD0 313 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 TMCO6Q96DC7 493 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 RNFT2Q96EX2 444 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 LRIG1Q96JA1 1093 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 C17orf62Q9BQA9 187 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 ENKD1Q9H0I2 346 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 MBNL1Q9NR56 388 aaKnown RBP9.27□□□□□ -0.93
SS18-203ENST00000415083 TAS2R7Q9NYW3 318 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 TMCC3Q9ULS5 477 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 ATG4BQ9Y4P1 393 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 DNAJB6O75190 326 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 BCL6P41182 706 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 MAPK9P45984 424 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 WNT4P56705 351 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 YIF1BQ5BJH7 314 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 C3orf38Q5JPI3 329 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 SNAP47Q5SQN1 464 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 PLPP4Q5VZY2 271 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 METRNLQ641Q3 311 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 KIAA1161Q6NSJ0 714 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 FAM131AQ6UXB0 335 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 CASP12Q6UXS9 341 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 ZNF765Q7L2R6 523 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 ZNF438Q7Z4V0 828 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 GRASPQ7Z6J2 395 aaPredicted RBP9.27□□□□□ -0.93
SS18-203ENST00000415083 LHFPL3Q86UP9 236 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 C11orf74Q86VG3 221 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 NKAIN4Q8IVV8 208 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 SLC9A6Q92581 669 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 DIO2Q92813 273 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 GIMAP5Q96F15 307 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 SLC38A1Q9H2H9 487 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 TMEM245Q9H330 911 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 PELI2Q9HAT8 420 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 IL20RAQ9UHF4 553 aa9.27□□□□□ -0.93
SS18-203ENST00000415083 ZC3H12DA2A288 527 aaKnown RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 C5orf58C9J3I9 102 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 HPGDSO60760 199 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 C8orf89P0DMQ9 161 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 ACP2P11117 423 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 FUT1P19526 365 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 XPAP23025 273 aaPredicted RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 P2RY2P41231 377 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 DEFA1P59665 94 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 DEFA3P59666 94 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 EFR3AQ14156 821 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 FGL2Q14314 439 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 ZIC1Q15915 447 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 C2orf27AQ580R0 203 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 AADACL4Q5VUY2 407 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 TRIM48Q8IWZ4 208 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 GALNT6Q8NCL4 622 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 OR2A1Q8NGT9 310 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 TMEM163Q8TC26 289 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 UPRTQ96BW1 309 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 ZNF764Q96H86 408 aaPredicted RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 MED18Q9BUE0 208 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 SLC6A20Q9NP91 592 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 PRDM7Q9NQW5 492 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 PAQR5Q9NXK6 330 aaPredicted RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 INSL6Q9Y581 213 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 EML5Q05BV3 1969 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 ABHD14A-ACY1A0A1B0GW23 586 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 CACNB4O00305 520 aaPredicted RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 CDC42EP2O14613 210 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 LANCL1O43813 399 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 HMGN2P05204 90 aaKnown RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 GSTM5P46439 218 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 TMEM52BQ4KMG9 183 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 LAMTOR1Q6IAA8 161 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 OR4C11Q6IEV9 310 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 XKRXQ6PP77 449 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 RAB43Q86YS6 212 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 DCUN1D3Q8IWE4 304 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 ZNF707Q96C28 371 aaPredicted RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 FAM46AQ96IP4 442 aaKnown RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 PRRC1Q96M27 445 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 TMEM246Q9BRR3 403 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 ISG20L2Q9H9L3 353 aaKnown RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 GPBP1L1Q9HC44 474 aaPredicted RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 BCL2L10Q9HD36 194 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 NEUROD4Q9HD90 331 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 ACSS1Q9NUB1 689 aaPredicted RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 MALT1Q9UDY8 824 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 SSR3Q9UNL2 185 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 MAU2Q9Y6X3 613 aa9.26□□□□□ -0.93
SS18-203ENST00000415083 GOLGA4Q13439 2230 aaKnown RBP9.26□□□□□ -0.93
SS18-203ENST00000415083 TMEM129A0AVI4 362 aa9.25□□□□□ -0.93
SS18-203ENST00000415083 TPD52L2O43399 206 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms