RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.31□□□□□ -0.288e-7■■■■■ 37.1
NIF3L1-205ENST00000409588 BTBD9Q96Q07 612 aa13.31□□□□□ -0.28
NIF3L1-205ENST00000409588 BBS4Q96RK4 519 aa13.31□□□□□ -0.28
NIF3L1-205ENST00000409588 METTL7AQ9H8H3 244 aa13.31□□□□□ -0.28
NIF3L1-205ENST00000409588 MKS1Q9NXB0 559 aa13.31□□□□□ -0.28
NIF3L1-205ENST00000409588 EXO1Q9UQ84 846 aaKnown RBP13.31□□□□□ -0.28
NIF3L1-205ENST00000409588 C15orf41Q9Y2V0 281 aa13.31□□□□□ -0.28
NIF3L1-205ENST00000409588 PLLPQ9Y342 182 aa13.31□□□□□ -0.28
NIF3L1-205ENST00000409588 ZNF407Q9C0G0 2248 aa13.31□□□□□ -0.28
NIF3L1-205ENST00000409588 ADGRG4Q8IZF6 3080 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 MYO9AB2RTY4 2548 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 DNAJC13O75165 2243 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 MYO1GB0I1T2 1018 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 PLOD2O00469 737 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 RGS14O43566 566 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 TRAPPC6AO75865 159 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 TOXO94900 526 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 EPPINO95925 133 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 CHEK2O96017 543 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 ACTL6AO96019 429 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 FGF4P08620 206 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 NUDT17P0C025 328 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 DDX5P17844 614 aaKnown RBP13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 TIMP3P35625 211 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 KRT20P35900 424 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 PNLIPRP2P54317 469 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 BTKQ06187 659 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 C2orf80Q0P641 193 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 PLCXD2Q0VAA5 305 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 DUSP8Q13202 625 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 EXOSC7Q15024 291 aaKnown RBP13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 CDSNQ15517 529 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 SLC25A35Q3KQZ1 300 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 VASNQ6EMK4 673 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 TMEM64Q6YI46 380 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 LURAP1LQ8IV03 231 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 SRRM1Q8IYB3 904 aaKnown RBP13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 FAM9CQ8IZT9 166 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 HGDQ93099 445 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 EXOSC8Q96B26 276 aaKnown RBP13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 OMA1Q96E52 524 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 LRRC46Q96FV0 321 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 SLC35A4Q96G79 324 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 ZNF764Q96H86 408 aaPredicted RBP13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 COL21A1Q96P44 957 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 GNRHR2Q96P88 292 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 KCNA7Q96RP8 456 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 TIMP4Q99727 224 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 ITPAQ9BY32 194 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 TRIM8Q9BZR9 551 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 EML4Q9HC35 981 aaKnown RBP13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 HHATLQ9HCP6 504 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 MYNNQ9NPC7 610 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 MIEF1Q9NQG6 463 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 SENP1Q9P0U3 644 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 MRTO4Q9UKD2 239 aaKnown RBP13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 MRPS18CQ9Y3D5 142 aaKnown RBP13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 FAM215AQ9Y5M1 114 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 LIPGQ9Y5X9 500 aa13.3□□□□□ -0.28
NIF3L1-205ENST00000409588 EML6Q6ZMW3 1958 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 ICOSLGO75144 302 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 COQ9O75208 318 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 CT45A8P0DMV1 189 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 CT45A9P0DMV2 189 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 PCSK2P16519 638 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 IGFBP2P18065 325 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 MSX1P28360 303 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 SOX18P35713 384 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 HTR6P50406 440 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 CYP27C1Q4G0S4 372 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 CT45A2Q5DJT8 189 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 FNDC7Q5VTL7 733 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 RTL6Q6ICC9 239 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 FAM71E1Q6IPT2 247 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 NOXRED1Q6NXP6 359 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 EMBQ6PCB8 327 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 SCIMPQ6UWF3 145 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 MEX3BQ6ZN04 569 aaKnown RBP13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 NCCRP1Q6ZVX7 275 aaPredicted RBP13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 GSPT2Q8IYD1 628 aaKnown RBP13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 ULK2Q8IYT8 1036 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 ZNF295-AS1Q8N0V1 137 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 MMP21Q8N119 569 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 CCT7Q99832 543 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 PRDM14Q9GZV8 571 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 ALKBH4Q9NXW9 302 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 SPRR3Q9UBC9 169 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 ZNF629Q9UEG4 869 aaPredicted RBP13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 DTX4Q9Y2E6 619 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 TMED5Q9Y3A6 229 aa13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 PHF3Q92576 2039 aaKnown RBP13.29□□□□□ -0.28
NIF3L1-205ENST00000409588 C15orf38-AP3S2A0A0A6YYH1 394 aa13.28□□□□□ -0.28
NIF3L1-205ENST00000409588 TLDC2A0PJX2 215 aa13.28□□□□□ -0.28
NIF3L1-205ENST00000409588 C19orf84I3L1E1 186 aa13.28□□□□□ -0.28
NIF3L1-205ENST00000409588 SEC22BO75396 215 aa13.28□□□□□ -0.28
NIF3L1-205ENST00000409588 ERN1O75460 977 aaKnown RBP13.28□□□□□ -0.28
NIF3L1-205ENST00000409588 REM1O75628 298 aa13.28□□□□□ -0.28
NIF3L1-205ENST00000409588 NEFHP12036 1026 aa13.28□□□□□ -0.28
NIF3L1-205ENST00000409588 ENDOUP21128 410 aaKnown RBP13.28□□□□□ -0.28
NIF3L1-205ENST00000409588 PTPN6P29350 595 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms