RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 POGLUT1Q8NBL1 392 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 PSD4Q8NDX1 1056 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 PTPMT1Q8WUK0 201 aaPredicted RBP9.55□□□□□ -0.88
NEDD8-202ENST00000396828 GAL3ST3Q96A11 431 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 VMP1Q96GC9 406 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 FCRL1Q96LA6 429 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 TBCDQ9BTW9 1192 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 EBPLQ9BY08 206 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 DPY30Q9C005 99 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 COPS7BQ9H9Q2 264 aaPredicted RBP9.55□□□□□ -0.88
NEDD8-202ENST00000396828 MCCC2Q9HCC0 563 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 PRDM7Q9NQW5 492 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 ZIM2Q9NZV7 527 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 CCDC167Q9P0B6 97 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 MCM8Q9UJA3 840 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 MMACHCQ9Y4U1 282 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 LIPGQ9Y5X9 500 aa9.55□□□□□ -0.88
NEDD8-202ENST00000396828 PHF3Q92576 2039 aaKnown RBP9.55□□□□□ -0.88
NEDD8-202ENST00000396828 NCKAP5O14513 1909 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 CAPN14A8MX76 684 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 NPIPA2E9PIF3 369 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 NPIPA3F8WFD2 350 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 RTCAO00442 366 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 LDB3O75112 727 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 GUCY1B2O75343 617 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 ATP5HO75947 161 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 ZFAND5O76080 213 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 TOXO94900 526 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 UBOX5O94941 541 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 KLK1P06870 262 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 CELA3AP09093 270 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 DDX5P17844 614 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 SDC1P18827 310 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 PRPS1L1P21108 318 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 GPX3P22352 226 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 CALB2P22676 271 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 PIK3R1P27986 724 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 MAPK12P53778 367 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 CLNS1AP54105 237 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 NME5P56597 212 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 NUP107P57740 925 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 RAE1P78406 368 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 ID2Q02363 134 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 ZNF763Q0D2J5 394 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 PMPCAQ10713 525 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 CYLC2Q14093 348 aaPredicted RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 ABHD17CQ6PCB6 329 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 ZNF793Q6ZN11 406 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 YTHDF3Q7Z739 585 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 CDH24Q86UP0 819 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 TMEM132CQ8N3T6 1108 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 GLB1L3Q8NCI6 653 aaPredicted RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 OR5M9Q8NGP3 310 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 LILRB4Q8NHJ6 448 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 CDC26Q8NHZ8 85 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 RP9Q8TA86 221 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 DOK4Q8TEW6 326 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 NRGNQ92686 78 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 C11orf24Q96F05 449 aaPredicted RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 NSL1Q96IY1 281 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 RASL10BQ96S79 203 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 MAPKAP1Q9BPZ7 522 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 NPLQ9BXD5 320 aaPredicted RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 ALOXE3Q9BYJ1 711 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 DDX31Q9H8H2 851 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 PNPLA3Q9NST1 481 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 MYOTQ9UBF9 498 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 TAGLN3Q9UI15 199 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 DAPP1Q9UN19 280 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 ERVK-11Q9UQG0 969 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 DLGAP4Q9Y2H0 992 aa9.54□□□□□ -0.88
NEDD8-202ENST00000396828 WBP11Q9Y2W2 641 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 YARS2Q9Y2Z4 477 aaKnown RBP9.54□□□□□ -0.88
NEDD8-202ENST00000396828 FAM234BA2RU67 622 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 A8MVJ9 347 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 HRKO00198 91 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 B3GALT2O43825 422 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 HNRNPCL1O60812 293 aaKnown RBP9.53□□□□□ -0.88
NEDD8-202ENST00000396828 GLSO94925 669 aaPredicted RBP9.53□□□□□ -0.88
NEDD8-202ENST00000396828 IFNA16P05015 189 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 COX4I1P13073 169 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 BSGP35613 385 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 HPCAL1P37235 193 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 RPL3P39023 403 aaKnown RBP9.53□□□□□ -0.88
NEDD8-202ENST00000396828 MAGEA5P43359 124 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 DNASE1L1P49184 302 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 RASSF2P50749 326 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 POLR2JP52435 117 aaKnown RBP9.53□□□□□ -0.88
NEDD8-202ENST00000396828 MTTPP55157 894 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 CLDN8P56748 225 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 UFM1P61960 85 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 PPIAP62937 165 aaKnown RBP9.53□□□□□ -0.88
NEDD8-202ENST00000396828 TRA2BP62995 288 aaKnown RBP9.53□□□□□ -0.88
NEDD8-202ENST00000396828 STX5Q13190 355 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 PTGR1Q14914 329 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 ELAVL1Q15717 326 aaKnown RBP9.53□□□□□ -0.88
NEDD8-202ENST00000396828 MMEL1Q495T6 779 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 GXYLT1Q4G148 440 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 RTL6Q6ICC9 239 aa9.53□□□□□ -0.88
NEDD8-202ENST00000396828 ARHGAP11AQ6P4F7 1023 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms