RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TRPV5Q9NQA5 729 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 SAGE1Q9NXZ1 904 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 GPR55Q9Y2T6 319 aaPredicted RBP11.43□□□□□ -0.58
CLIP3-201ENST00000360535 A0A087WUU8 490 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 SPINT1O43278 529 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 TP53P04637 393 aaPredicted RBP11.43□□□□□ -0.58
CLIP3-201ENST00000360535 IFI30P13284 250 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 CDH11P55287 796 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 CDK10Q15131 360 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF311Q5JNZ3 666 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 C18orf63Q68DL7 685 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 IKBIPQ70UQ0 350 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 OR8D4Q8NGM9 314 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 OR2L2Q8NH16 312 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 CXorf40AQ8TE69 158 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 C12orf66Q96MD2 445 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 RNF121Q9H920 327 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 LHX9Q9NQ69 397 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 MTCL1Q9Y4B5 1905 aaKnown RBP11.43□□□□□ -0.58
CLIP3-201ENST00000360535 LRRK1Q38SD2 2015 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 MN1Q10571 1320 aaPredicted RBP11.43□□□□□ -0.58
CLIP3-201ENST00000360535 A0A0B4J293 547 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 HMX3A6NHT5 357 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 KIAA0355O15063 1070 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 PLA2G10O15496 165 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 HYAL3O43820 417 aaPredicted RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 PLOD3O60568 738 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 MOSPD3O75425 235 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 FGBP02675 491 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 ADRB3P13945 408 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 PTPN2P17706 415 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 ITGB8P26012 769 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 RFX3P48380 749 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 LRRC32Q14392 662 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 TATDN3Q17R31 274 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 HSDL2Q6YN16 418 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SLC39A5Q6ZMH5 540 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 NOXA1Q86UR1 476 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 KLBQ86Z14 1044 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 DCUN1D3Q8IWE4 304 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF557Q8N988 423 aaPredicted RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SLAIN1Q8ND83 568 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 RNF31Q96EP0 1072 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 FCRL4Q96PJ5 515 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 OR52A5Q9H2C5 316 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 FZD3Q9NPG1 666 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 TRAPPC4Q9Y296 219 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 CACNA1CQ13936 2221 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 IGLON5A6NGN9 336 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 OR52A4PA6NMU1 304 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 ISM1B1AKI9 464 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 POLR1CO15160 346 aaPredicted RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 PRNPP04156 253 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 ADH5P11766 374 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 EPCAMP16422 314 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 CHRNEQ04844 493 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 CSTF1Q05048 431 aaKnown RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 DUSP2Q05923 314 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 LCN1P1Q5VSP4 162 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SLC27A4Q6P1M0 643 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 LILRA6Q6PI73 481 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 XKRXQ6PP77 449 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 LCTLQ6UWM7 567 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SIX5Q8N196 739 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 VWA5B2Q8N398 1253 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 YIPF7Q8N8F6 280 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SETD7Q8WTS6 366 aaKnown RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SMAP2Q8WU79 429 aaPredicted RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 DACT3Q96B18 629 aaPredicted RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 WDR34Q96EX3 536 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 MED20Q9H944 212 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 MAN2C1Q9NTJ4 1040 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 DIMT1Q9UNQ2 313 aaKnown RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 ICKQ9UPZ9 632 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 PLEKHM1Q9Y4G2 1056 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 F5P12259 2224 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 COL4A6Q14031 1691 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 TRBV23OR9-2A0A075B6M9 112 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 LILRB3O75022 631 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SLC35G4P0C7Q5 338 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 FUT1P19526 365 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 NTSP30990 170 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 MAPK9P45984 424 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 KLHL22Q53GT1 634 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 IDNKQ5T6J7 187 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF793Q6ZN11 406 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 GDPGP1Q6ZNW5 385 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SPRED2Q7Z698 418 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 NKAIN4Q8IVV8 208 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 OR51G2Q8NGK0 314 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 NEIL3Q8TAT5 605 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SETD6Q8TBK2 473 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 OR8D1Q8WZ84 308 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 AMDHD1Q96NU7 426 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 POLDIP3Q9BY77 421 aaKnown RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 SLC35C2Q9NQQ7 365 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 H2AFY2Q9P0M6 372 aaPredicted RBP11.42□□□□□ -0.58
CLIP3-201ENST00000360535 PTGFRNQ9P2B2 879 aa11.42□□□□□ -0.58
CLIP3-201ENST00000360535 AKR7A2O43488 359 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 PIP5K1CO60331 668 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms