RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CD300AQ9UGN4 299 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ATP6V1HQ9UI12 483 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ST6GALNAC2Q9UJ37 374 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ITGB1BP2Q9UKP3 347 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PADI1Q9ULC6 663 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 G3BP2Q9UN86 482 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 TDRKHQ9Y2W6 561 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PRKAB1Q9Y478 270 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PLEKHM1Q9Y4G2 1056 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 CROCCQ5TZA2 2017 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PCSK5Q92824 1860 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 TRBV5-3A0A0A0MS03 114 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 OR2A25A4D2G3 310 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 ANKDD1BA6NHY2 528 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 OR52A4PA6NMU1 304 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 C2orf74A8MZ97 194 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 RNASET2O00584 256 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 SCAMP2O15127 329 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 TOX3O15405 576 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 AKAP8O43823 692 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 PCDH7O60245 1069 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 ZG16O60844 167 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 GUCY1B2O75343 617 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 EML2O95834 649 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 VIPP01282 170 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 ABCB1P08183 1280 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 CHRM5P08912 532 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 FGF5P12034 268 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 HTR1EP28566 365 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 GFRA1P56159 465 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 STXBP1P61764 594 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 CSNK1G2P78368 415 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 TXNL4AP83876 142 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 LSAMPQ13449 338 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 CEACAM7Q14002 265 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 FLOT2Q14254 428 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 KPNB1Q14974 876 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 FAM174BQ3ZCQ3 159 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 EMC4Q5J8M3 183 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 CATSPEREQ5SY80 951 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 DEPDC1Q5TB30 811 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 STEAP3Q658P3 488 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 MRM1Q6IN84 353 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 LCN8Q6JVE9 175 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 TEPPQ6URK8 271 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 SUSD1Q6UWL2 747 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 COMMD6Q7Z4G1 85 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 GPR180Q86V85 440 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 PLXDC1Q8IUK5 500 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 TMEM132CQ8N3T6 1108 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 ZCCHC7Q8N3Z6 543 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 CISD2Q8N5K1 135 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 MFSD9Q8NBP5 474 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 PPFIBP2Q8ND30 876 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 ST6GALNAC3Q8NDV1 305 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 FDCSPQ8NFU4 85 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 GOT1L1Q8NHS2 421 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 GTF2H4Q92759 462 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 COQ8BQ96D53 544 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 MBD6Q96DN6 1003 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 APIPQ96GX9 242 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 C1orf159Q96HA4 380 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 TEX37Q96LM6 180 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 CDRT15Q96T59 188 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 HBEGFQ99075 208 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 MTERF1Q99551 399 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 CGREF1Q99674 301 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 SMAD5Q99717 465 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 BARD1Q99728 777 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 NPAS2Q99743 824 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 GPR87Q9BY21 358 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 RAB33BQ9H082 229 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 VCX3BQ9H321 246 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 SRMSQ9H3Y6 488 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 DDX31Q9H8H2 851 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 MRPS30Q9NP92 439 aaKnown RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 C8orf4Q9NR00 106 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 TAS2R7Q9NYW3 318 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 C6orf203Q9P0P8 240 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 PPP4R1LQ9P1A2 415 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 ZNF624Q9P2J8 865 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-201ENST00000355766 CPNE7Q9UBL6 633 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 BTNL2Q9UIR0 455 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 MAGEL2Q9UJ55 1249 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 PSMD13Q9UNM6 376 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 DLGAP4Q9Y2H0 992 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 L3MBTL1Q9Y468 752 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 PCDHA9Q9Y5H5 950 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 HEATR5BQ9P2D3 2071 aa6.52□□□□□ -1.37
VPS13A-201ENST00000355766 PRRC2CQ9Y520 2896 aaKnown RBP6.51□□□□□ -1.37
VPS13A-201ENST00000355766 TNRC6AQ8NDV7 1962 aaKnown RBP6.51□□□□□ -1.37
VPS13A-201ENST00000355766 ARHGEF17Q96PE2 2063 aaPredicted RBP6.51□□□□□ -1.37
VPS13A-201ENST00000355766 ASPDHA6ND91 283 aa6.51□□□□□ -1.37
VPS13A-201ENST00000355766 URADA6NGE7 173 aa6.51□□□□□ -1.37
VPS13A-201ENST00000355766 ACOT8O14734 319 aa6.51□□□□□ -1.37
VPS13A-201ENST00000355766 LRRTM2O43300 516 aa6.51□□□□□ -1.37
VPS13A-201ENST00000355766 ENTPD5O75356 428 aa6.51□□□□□ -1.37
VPS13A-201ENST00000355766 PSMG1O95456 288 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms