RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 EGLN3Q9H6Z9 239 aa14.5□□□□□ -0.09
UPF3B-202ENST00000345865 OR6C2Q9NZP2 312 aa14.5□□□□□ -0.09
UPF3B-202ENST00000345865 SNX7Q9UNH6 387 aa14.5□□□□□ -0.09
UPF3B-202ENST00000345865 UPK1BO75841 260 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 EGFP01133 1207 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 ZNF888P0CJ79 500 aaPredicted RBP14.49□□□□□ -0.09
UPF3B-202ENST00000345865 ARFIP1P53367 373 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 HOXC5Q00444 222 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 CDK5Q00535 292 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 TFF2Q03403 129 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 COX10Q12887 443 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 SLC13A2Q13183 592 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 SYT14P1Q58G82 188 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 TMEM31Q5JXX7 168 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 C6orf132Q5T0Z8 1188 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 MEDAGQ5VYS4 303 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 FBXO42Q6P3S6 717 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 FAM111BQ6SJ93 734 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 PARP16Q8N5Y8 322 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 C1QTNF7Q9BXJ2 289 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 NTNG1Q9Y2I2 539 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 RPL36Q9Y3U8 105 aaKnown RBP14.49□□□□□ -0.09
UPF3B-202ENST00000345865 COLEC10Q9Y6Z7 277 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 CASC3O15234 703 aaKnown RBP14.49□□□□□ -0.09
UPF3B-202ENST00000345865 TBX1O43435 398 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 HOXB2P14652 356 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 TRHRP34981 398 aaPredicted RBP14.49□□□□□ -0.09
UPF3B-202ENST00000345865 TSFMP43897 325 aaKnown RBP14.49□□□□□ -0.09
UPF3B-202ENST00000345865 PCYT1AP49585 367 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 PRR5P85299 388 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 SPHARQ15513 63 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 ZNF311Q5JNZ3 666 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 ENTPD8Q5MY95 495 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 STEAP3Q658P3 488 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 TMEM184AQ6ZMB5 413 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 PRICKLE2Q7Z3G6 844 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 FAM26EQ8N5C1 309 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 SRFBP1Q8NEF9 429 aaKnown RBP14.49□□□□□ -0.09
UPF3B-202ENST00000345865 SLC35A4Q96G79 324 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 LRR1Q96L50 414 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 CDCA3Q99618 268 aaPredicted RBP14.49□□□□□ -0.09
UPF3B-202ENST00000345865 POLDIP3Q9BY77 421 aaKnown RBP14.49□□□□□ -0.09
UPF3B-202ENST00000345865 TMEM168Q9H0V1 697 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 SEMA4GQ9NTN9 838 aa14.49□□□□□ -0.09
UPF3B-202ENST00000345865 TAF4O00268 1085 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 KLF8O95600 359 aaPredicted RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 GTF2E2P29084 291 aaKnown RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 SOX18P35713 384 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 MAGEA8P43361 318 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 STXBP1P61764 594 aaKnown RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 DLX2Q07687 328 aaPredicted RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 FLYWCH1Q4VC44 716 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 ATAT1Q5SQI0 421 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 NANOGP1Q8N7R0 232 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 SLC16A11Q8NCK7 471 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 OR7G2Q8NG99 324 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 OR8D4Q8NGM9 314 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 BMFQ96LC9 184 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 CAB39Q9Y376 341 aaPredicted RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 HEBP2Q9Y5Z4 205 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 FANCMQ8IYD8 2048 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 CPSF4LA6NMK7 179 aaKnown RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 P2RX6O15547 441 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 CTSVO60911 334 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 NR2F6P10588 404 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 MAGP20916 626 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 CRYBB2P43320 205 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 ANXA11P50995 505 aaKnown RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 PDX1P52945 283 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 GAS1P54826 345 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 MLLT1Q03111 559 aaPredicted RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 MAP4K2Q12851 820 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 GNA13Q14344 377 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 NRROSQ86YC3 692 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 OR4N5Q8IXE1 308 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 MINDY2Q8NBR6 621 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 DIO2Q92813 273 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 MOAP1Q96BY2 351 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 ZNF582Q96NG8 517 aaPredicted RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 TRNT1Q96Q11 434 aaKnown RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 ARHGDIGQ99819 225 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 CNPPD1Q9BV87 410 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 LMAN2LQ9H0V9 348 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 CNIH4Q9P003 139 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 KCMF1Q9P0J7 381 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 TESQ9UGI8 421 aaKnown RBP14.48□□□□□ -0.09
UPF3B-202ENST00000345865 ZNF780BQ9Y6R6 833 aa14.48□□□□□ -0.09
UPF3B-202ENST00000345865 CTDSP2O14595 271 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 CYP7B1O75881 506 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 ACSL1P33121 698 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 SEPHS1P49903 392 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 TGM3Q08188 693 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 PRAMEF8Q5VWM4 474 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 PRAMEF7Q5VXH5 474 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 PPP2R2DQ66LE6 453 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 OR52I1Q8NGK6 324 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 GAL3ST3Q96A11 431 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 BARHL1Q9BZE3 327 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 KLHL25Q9H0H3 589 aa14.47□□□□□ -0.09
UPF3B-202ENST00000345865 MIR1-1HGQ9H1L0 117 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms