RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 PRODHO43272 600 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 SGCEO43556 437 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 TRBC1P01850 177 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 PCSK1P29120 753 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 GAS1P54826 345 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 SMIM11AP58511 58 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 ARMC12Q5T9G4 340 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 C5orf46Q6UWT4 87 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 APOBEC3FQ8IUX4 373 aaKnown RBP17.51■□□□□ 0.39
SMPD1-201ENST00000342245 ZNF683Q8IZ20 524 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 C12orf45Q8N5I9 185 aaPredicted RBP17.51■□□□□ 0.39
SMPD1-201ENST00000342245 OR52N2Q8NGI0 321 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 TCEAL4Q96EI5 215 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 LRR1Q96L50 414 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 SAP130Q9H0E3 1048 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 C20orf85Q9H1P6 137 aa17.51■□□□□ 0.39
SMPD1-201ENST00000342245 TRBC2A0A5B9 178 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 RRN3P2A6NIE6 340 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 ST8SIA5O15466 376 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 PRAMEF11O60813 436 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 ANXA5P08758 320 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 LAMP1P11279 417 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 POU3F2P20265 443 aaPredicted RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 SRP9P49458 86 aaKnown RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 TMUB2Q71RG4 321 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 L3MBTL4Q8NA19 623 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 BEST4Q8NFU0 473 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 GTF3C2Q8WUA4 911 aaPredicted RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 CNOT9Q92600 299 aaKnown RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 RNFT2Q96EX2 444 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 SEMA4CQ9C0C4 833 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 C11orf49Q9H6J7 331 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 DNAJC11Q9NVH1 559 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 KLK14Q9P0G3 267 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 PCOLCE2Q9UKZ9 415 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 ANGPT4Q9Y264 503 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 FNDC3AQ9Y2H6 1198 aaKnown RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 IQCF5A8MTL0 148 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 ARHGEF33A8MVX0 844 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 GALR3O60755 368 aaPredicted RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 UBL3O95164 117 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 SOX14O95416 240 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 EIF4EP06730 217 aaKnown RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 GPR143P51810 404 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 SEC61A1P61619 476 aaKnown RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 CACNG1Q06432 222 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 SNTB2Q13425 540 aaKnown RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 TRIM40Q6P9F5 258 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 GSG1LQ6UXU4 331 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 LBX2Q6XYB7 198 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 SAMD12Q8N8I0 201 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 ZNF485Q8NCK3 441 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 PXT1Q8NFP0 134 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 NFKBIDQ8NI38 313 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 NANPQ8TBE9 248 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 KAT2AQ92830 837 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 TMED9Q9BVK6 235 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 ADGRE3Q9BY15 652 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 TBC1D17Q9HA65 648 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 SPATA6Q9NWH7 488 aaPredicted RBP17.5■□□□□ 0.39
SMPD1-201ENST00000342245 SLC9A8Q9Y2E8 581 aa17.5■□□□□ 0.39
SMPD1-201ENST00000342245 POM121CA8CG34 1229 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 SUSD5O60279 629 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ZNF7P17097 686 aaPredicted RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 CCND3P30281 292 aaPredicted RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ARHGDIBP52566 201 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 CHRNA6Q15825 494 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 MINDY4Q4G0A6 757 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 HAGHLQ6PII5 290 aaPredicted RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 SLC36A4Q6YBV0 504 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 SETD7Q8WTS6 366 aaKnown RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ORAI1Q96D31 301 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ELP4Q96EB1 424 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ABHD1Q96SE0 405 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ZNF768Q9H5H4 540 aaKnown RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 MGAT4CQ9UBM8 478 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 CHST2Q9Y4C5 530 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 IGLV3-10A0A075B6K4 115 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 CACNB4O00305 520 aaPredicted RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 RNASET2O00584 256 aaKnown RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 OR10H3O60404 316 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 OR2A4O95047 310 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 HPXP02790 462 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 RLN2P04090 185 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 LGALS2P05162 132 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 PVALBP20472 110 aaPredicted RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ATP5A1P25705 553 aaKnown RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 PSMD4P55036 377 aaKnown RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ERVK-25P63136 954 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 CDK6Q00534 326 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 STX4Q12846 297 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 TTLL4Q14679 1199 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 ZC3H14Q6PJT7 736 aaKnown RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 UQCC3Q6UW78 93 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 CD300LDQ6UXZ3 194 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 BCDIN3DQ7Z5W3 292 aaKnown RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 JAZF1Q86VZ6 243 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 DMBX1Q8NFW5 382 aa17.49■□□□□ 0.39
SMPD1-201ENST00000342245 NARS2Q96I59 477 aaKnown RBP17.49■□□□□ 0.39
SMPD1-201ENST00000342245 OR2A7Q96R45 310 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms